PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024972042.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 343aa    MW: 38828.7 Da    PI: 4.6644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024972042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-102693081054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k L
  XP_024972042.1 269 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVEYVKFL 308
                     9******************97.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MESFGNFFDE EWHSLSRIFV DHDQDSDRFT GHEFMSSEHD DHGLNFEVPS NVFSNEDSFV  60
YVSDLINPNF YHFLSQESSI SSSGTSNGTV SLPYPCHDQS FQFFPSNSIV PSPSNDVCDQ  120
SIGFCMMDEI NNSSLSSPVF SDDVVAEKVK MENSHGKRKL EMLESSDAME DEVNNEKIDK  180
NPKKKSRVNV SISLFYKNKK NVQPKKNQKI DDTEKSNNNN NNNNGETNGQ TSSSCSSGDD  240
LNGSQDLNRN SKTRASRGTA TDPQSLYARK RRERINERLR ILQNLVPNGT KVDISTMLEE  300
AVEYVKFLKL QIQLLSSDDM WMYAPIAYNG MDMGLYQSIT PTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-41bHLH family protein