PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024972023.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

BES1

Protein Properties

Length: 342aa MW: 38080.6 Da PI: 9.7581

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024972023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	180.9	5.8e-56	62	176	1	114
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94 gg++rkp+w+E+Enn+rRERrRRaiaa i+ GLRaqGny+lpk++DnneVlkALc+eAGwvv +DGtt+rkg+kp ++ e+ +sa+++p+ss+ XP_024972023.1 62 GGGRRKPSWREKENNRRRERRRRAIAANIFNGLRAQGNYNLPKHCDNNEVLKALCKEAGWVVLPDGTTFRKGCKPSpSSIEIKCTSANTTPSSSQ 156 689***********************************************************************9999**********9 PP DUF822 95 qsslkssalaspvesysasp 114 s+ ss+++sp s+ p XP_024972023.1 157 RPSPPSSSFPSPSRLDSKNP 176 9********988766655 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
FETPNPHTHH RFFSFLDLYI HREGDNLRWV WFCFEGDRGR EMMWEGGSSS AAAEEAAGGG 60 GGGGRRKPSW REKENNRRRE RRRRAIAANI FNGLRAQGNY NLPKHCDNNE VLKALCKEAG 120 WVVLPDGTTF RKGCKPSPSS IEIKCTSANT TPSSSQRPSP PSSSFPSPSR LDSKNPPSNN 180 PFGFLSNSIP PSLPPLRISS SAPVTPPLSS PTSKFPKKNN LDWEDFTKQY TSTFSLPVFA 240 SSVPTSPNRH QRFRPATIPE CDEPDWCTTG SFQRLRFQDC DPMMVNPNSP TFNLVNPNAR 300 VVATNDPIRE KGKGVKAWKG ERFHDVGFDD LELTLGSGTA KI

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

FETPNPHTHH RFFSFLDLYI HREGDNLRWV WFCFEGDRGR EMMWEGGSSS AAAEEAAGGG  60
GGGGRRKPSW REKENNRRRE RRRRAIAANI FNGLRAQGNY NLPKHCDNNE VLKALCKEAG  120
WVVLPDGTTF RKGCKPSPSS IEIKCTSANT TPSSSQRPSP PSSSFPSPSR LDSKNPPSNN  180
PFGFLSNSIP PSLPPLRISS SAPVTPPLSS PTSKFPKKNN LDWEDFTKQY TSTFSLPVFA  240
SSVPTSPNRH QRFRPATIPE CDEPDWCTTG SFQRLRFQDC DPMMVNPNSP TFNLVNPNAR  300
VVATNDPIRE KGKGVKAWKG ERFHDVGFDD LELTLGSGTA KI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	84	RRKPSWREKENNRRRERRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	3e-55	BES1 family protein