PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971806.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 363aa MW: 41653.5 Da PI: 6.7547

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.3	5.9e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+++ +vi+evd++k+ePwdL++++k e+ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk + XP_024971806.1 8 VPPGFRFHPTDEELLHYYLKKKISFEKFDM-DVIREVDLNKIEPWDLQERCKIgstPENEWYFFSHKDKKYPTGSRTNRATNAGFWKATGRDKCI 101 69**************************.99**********964444222556********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy grap+g+ktdW+mheyrle XP_024971806.1 102 RN-TFKKIGMRKTLVFYCGRAPHGQKTDWIMHEYRLE 137 9.8899***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MASSNGGVPP GFRFHPTDEE LLHYYLKKKI SFEKFDMDVI REVDLNKIEP WDLQERCKIG 60 STPENEWYFF SHKDKKYPTG SRTNRATNAG FWKATGRDKC IRNTFKKIGM RKTLVFYCGR 120 APHGQKTDWI MHEYRLEDVE DHHDPLNPIP ISTSEDGWVI CRVFKKRNLF KIGGNEASGG 180 SGIGSERHNT TTNQPRSFPY GQDHHQYLPY HQPQSFDLGL NYTHQYPHLV PTHKPLGYGF 240 LNLPSEDSPI VVKQLMSNPR ECDSGSCENQ LDIGYHACEP GLEVDTCEPA QSMVNANLRQ 300 DQTLNEWGMI DRLVTSHLGQ PNEDVNLTKG ALRYRNDATP SSSSMQEINH LSLRGEDFWG 360 YEK

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MASSNGGVPP GFRFHPTDEE LLHYYLKKKI SFEKFDMDVI REVDLNKIEP WDLQERCKIG  60
STPENEWYFF SHKDKKYPTG SRTNRATNAG FWKATGRDKC IRNTFKKIGM RKTLVFYCGR  120
APHGQKTDWI MHEYRLEDVE DHHDPLNPIP ISTSEDGWVI CRVFKKRNLF KIGGNEASGG  180
SGIGSERHNT TTNQPRSFPY GQDHHQYLPY HQPQSFDLGL NYTHQYPHLV PTHKPLGYGF  240
LNLPSEDSPI VVKQLMSNPR ECDSGSCENQ LDIGYHACEP GLEVDTCEPA QSMVNANLRQ  300
DQTLNEWGMI DRLVTSHLGQ PNEDVNLTKG ALRYRNDATP SSSSMQEINH LSLRGEDFWG  360
YEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-129	NAC family protein