PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971803.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 836aa    MW: 92014.4 Da    PI: 6.1237
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_024971803.1 19 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    5679*****************************************************97 PP
2START169.81.8e-531593672205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++ + ++  g+++l 
  XP_024971803.1 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVVNLLPTAngGTIELL 252
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+  Rdf+ +Ry+   ++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_024971803.1 253 YMQLYAPTTLATaRDFWLLRYTSATEDGSLVVCERSLTNTQNGPSmpsVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 347
                     ********************************************9888899******************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++ +l+++++
  XP_024971803.1 348 ESSTVLAQKTTMMALRQLRQ 367
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    
MMMAMSLKDD KGGLLDNGKY VRYTPEQVEA LERLYHECPK PSSIRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRRE SSRLQGVNRK LTAMNKLLME ENDRLQKQVS HLVYENGYFR  120
QHTQNTALAT KDTSCESVVT SHLTQNPPQD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVDVVNL  240
LPTANGGTIE LLYMQLYAPT TLATARDFWL LRYTSATEDG SLVVCERSLT NTQNGPSMPS  300
VQNFVRAEML PSGYLIRPCE GGGSIIHIVD HMNLEAWSVP EVLRPLYESS TVLAQKTTMM  360
ALRQLRQIAQ EASQSSTPNW GRRPAALRAL SQRLSRGFNE ALNGFSDEGW SLMGNDGMDD  420
VTILVNSSPE KLMGLNLSFT NGYTPVSNAV LCAKASMLLQ NVPPALLLRF LREHRSEWAD  480
NNIDAYSAAA VKLGPCSLPG SRIGNFGGQV ILPLAHTIEH EELLEVIKLE GVEHCPEDSL  540
MPRDMFLLQL CSGMDENAVG MCAELIFAPI DSSFADDAPL LPSGFRIIPL DSGKETSSPN  600
RTLDLASALE IGGSGNKVSG DPNTASNTAR SVMTIAFEFA FETHMQESVA AMARQYIRTI  660
ISSVQRVASA LSPSNLNPNG GLQAPMGTPE AHTLARWICH SYRCYLGVEL LKAGCHGNES  720
VLKSLWHHSD AILCCSLKAL PVFTFANQAG LDMLETTLVA LQEITLEKIL DEHGRKSLCS  780
EFPQIMQQGF ACLQGGICLS SMGRPVSYER AVAWKVLNEE ENAHCICFMF INWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein