PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971766.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 460aa MW: 49300.7 Da PI: 8.943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.7e-16	91	177	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + L++ ++e+ +l+r++l++++We v++ ++e g ++s +qCk+k++nl+kryk ++++++ ++s s++++f++++ XP_024971766.1 91 EWSDTAIAILLDSYTEKFMALNRSNLRGKDWEVVAELVAESGDkqpRKSIEQCKNKIDNLKKRYKLETQRMEI--NGSASSWVWFKKMD 177 5***********************************6655422278*************99998887..467778*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MASSTNVESP PIGEGSNNVN NSETPATAAA VNSPATTAAA VNSPTTPAAV NSPGTAEDVT 60 KTSEITPNGR RSKKQKLDSS TGGDHRRERE EWSDTAIAIL LDSYTEKFMA LNRSNLRGKD 120 WEVVAELVAE SGDKQPRKSI EQCKNKIDNL KKRYKLETQR MEINGSASSW VWFKKMDIVF 180 GSLMGPKSGA GTGATSDDDK SVGASSPHRL RRSARLAPTS APVRSNFKTT TNIKWKRVVF 240 KVSGTALAGS GQSIDPKIAE EVATASRDGV EVAIIIGGRN FFCGDSWVSA TDLDRPTAYQ 300 IGMMATVMNS VLLQSALEKL GIQTRVQSAF LMPEIAEPYN RLRAMRHLDK GRVVIFGGVG 360 AGTGNPLFTT DTAAALRASE INADAVIKGT NVNGICDKHK VPLDQISFRD AVSRDCGSMD 420 LMAIQFCEEN SIPVVIFNML ERGNVAKALT GGQVGTLIDQ

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MASSTNVESP PIGEGSNNVN NSETPATAAA VNSPATTAAA VNSPTTPAAV NSPGTAEDVT  60
KTSEITPNGR RSKKQKLDSS TGGDHRRERE EWSDTAIAIL LDSYTEKFMA LNRSNLRGKD  120
WEVVAELVAE SGDKQPRKSI EQCKNKIDNL KKRYKLETQR MEINGSASSW VWFKKMDIVF  180
GSLMGPKSGA GTGATSDDDK SVGASSPHRL RRSARLAPTS APVRSNFKTT TNIKWKRVVF  240
KVSGTALAGS GQSIDPKIAE EVATASRDGV EVAIIIGGRN FFCGDSWVSA TDLDRPTAYQ  300
IGMMATVMNS VLLQSALEKL GIQTRVQSAF LMPEIAEPYN RLRAMRHLDK GRVVIFGGVG  360
AGTGNPLFTT DTAAALRASE INADAVIKGT NVNGICDKHK VPLDQISFRD AVSRDCGSMD  420
LMAIQFCEEN SIPVVIFNML ERGNVAKALT GGQVGTLIDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-152	Trihelix family protein