PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971765.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 464aa MW: 49712.2 Da PI: 8.943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971765.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.4	5.8e-16	91	177	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + L++ ++e+ +l+r++l++++We v++ ++e g ++s +qCk+k++nl+kryk ++++++ ++s s++++f++++ XP_024971765.1 91 EWSDTAIAILLDSYTEKFMALNRSNLRGKDWEVVAELVAESGDkqpRKSIEQCKNKIDNLKKRYKLETQRMEI--NGSASSWVWFKKMD 177 5***********************************6655422278*************99998887..467778*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MASSTNVESP PIGEGSNNVN NSETPATAAA VNSPATTAAA VNSPTTPAAV NSPGTAEDVT 60 KTSEITPNGR RSKKQKLDSS TGGDHRRERE EWSDTAIAIL LDSYTEKFMA LNRSNLRGKD 120 WEVVAELVAE SGDKQPRKSI EQCKNKIDNL KKRYKLETQR MEINGSASSW VWFKKMDIVF 180 GSLMGPKSGA GTGATSDDDK SVGASSPHRL RRSARLAPTS APVRSNFKTT TNIKWKRVVF 240 KVSGTALAGS GQSIDPKVAL QIAEEVATAS RDGVEVAIII GGRNFFCGDS WVSATDLDRP 300 TAYQIGMMAT VMNSVLLQSA LEKLGIQTRV QSAFLMPEIA EPYNRLRAMR HLDKGRVVIF 360 GGVGAGTGNP LFTTDTAAAL RASEINADAV IKGTNVNGIC DKHKVPLDQI SFRDAVSRDC 420 GSMDLMAIQF CEENSIPVVI FNMLERGNVA KALTGGQVGT LIDQ

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MASSTNVESP PIGEGSNNVN NSETPATAAA VNSPATTAAA VNSPTTPAAV NSPGTAEDVT  60
KTSEITPNGR RSKKQKLDSS TGGDHRRERE EWSDTAIAIL LDSYTEKFMA LNRSNLRGKD  120
WEVVAELVAE SGDKQPRKSI EQCKNKIDNL KKRYKLETQR MEINGSASSW VWFKKMDIVF  180
GSLMGPKSGA GTGATSDDDK SVGASSPHRL RRSARLAPTS APVRSNFKTT TNIKWKRVVF  240
KVSGTALAGS GQSIDPKVAL QIAEEVATAS RDGVEVAIII GGRNFFCGDS WVSATDLDRP  300
TAYQIGMMAT VMNSVLLQSA LEKLGIQTRV QSAFLMPEIA EPYNRLRAMR HLDKGRVVIF  360
GGVGAGTGNP LFTTDTAAAL RASEINADAV IKGTNVNGIC DKHKVPLDQI SFRDAVSRDC  420
GSMDLMAIQF CEENSIPVVI FNMLERGNVA KALTGGQVGT LIDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-154	Trihelix family protein