PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971735.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 217aa    MW: 24002.6 Da    PI: 6.1505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.4e-07981232555
                     CTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  25 ellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +l+P+     s K +Ka++L +A+eY+k+Lq
  XP_024971735.1  98 TLVPN-----SNKTDKASMLDEAIEYLKQLQ 123
                     45555.....47******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MADLYGTNND RSFSSSSSLE SEDMSFFLQS FLNNSSTKGN SFYGTETNQV NFPPRHDVAG  60
FDLGCEVQKQ SEGRQNSNPP RSSKRARAAE IHNLSEKTLV PNSNKTDKAS MLDEAIEYLK  120
QLQLKVQTLT MRNGLGLQQP IYSQQEEMEM EMGANPSQGG FSIDIGNGHM PSLSHMMKQD  180
NVFGSQVNQY HHVFTNHSTS IKEIGCLNGK IPSPGVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-12bHLH family protein