PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024971729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27722.5 Da PI: 7.6929 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.1 | 5.4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl ey++ XP_024971729.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLCEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 102.6 | 5.3e-34 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + + +s++++ + s++ e+akLk++ie+Lq++qRh++Ge+L+sLs+keLq+LeqqL+ +lk+iR +Kn+++le+i++lqkk kel ++n+ L+k XP_024971729.1 76 TEMQLTSTHNESQGSWNLEHAKLKARIESLQKTQRHFMGEELDSLSMKELQNLEQQLDMALKHIRLRKNQVMLESISQLQKKDKELLDQNNFLSK 170 5678888899999********************************************************************************** PP K-box 97 klee 100 +++e XP_024971729.1 171 QIKE 174 *987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLCEYATD 60 SAMERILERY ERYSYTEMQL TSTHNESQGS WNLEHAKLKA RIESLQKTQR HFMGEELDSL 120 SMKELQNLEQ QLDMALKHIR LRKNQVMLES ISQLQKKDKE LLDQNNFLSK QIKEMEKEVG 180 QHDVEHQSHE MIASFQLGIC DTYNGGQAGG ADGEVEENPR QVQGQASTSG MPPWMIQHMN 240 K |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-92 | MIKC_MADS family protein |