PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024971547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 17889.3 Da PI: 5.5154 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.1 | 2.5e-37 | 9 | 106 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+ pyf+ +q +++fa+vhk+FGasnv+kll +lp ++r++a+ s+ yeA ar++dP+yG+++ il+l+qq+ l++e+ XP_024971547.1 9 SCGACKFLRRKCTNECVFTPYFCYSQgAHHFAAVHKVFGASNVSKLLMKLPLQNRSEAAISISYEALARMEDPIYGCIAQILALEQQVTILQEEI 103 6***********************9989******************************************************************9 PP DUF260 95 all 97 ++l XP_024971547.1 104 EQL 106 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MTASGSSSSC GACKFLRRKC TNECVFTPYF CYSQGAHHFA AVHKVFGASN VSKLLMKLPL 60 QNRSEAAISI SYEALARMED PIYGCIAQIL ALEQQVTILQ EEIEQLTSYM AYDPIGLLNY 120 ESFQEIGDLN AGLPSSFQFN NTSISDHLNQ PLLFAAPHAS FF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 4e-45 | LBD family protein |