PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971495.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 434aa MW: 48195.8 Da PI: 8.3017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971495.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.8	3.5e-17	165	214	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P+ ++K +Ka+ L +++eYI+ Lq XP_024971495.1 165 RSKHSATEQRRRSKINDRFSMLRDIIPHG----DQKRDKASFLLEVIEYIQFLQ 214 899***********************7....7*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MELPQPHSYG TQGRKPTHDF LSLRSPAHQD PTLTPPGRYL KTYDLLQPLV GKNGDEIRST 60 EKPMSNILPS GIGSYSINHI SYINQSHRSS KPEAAQSSSS DRNDENSKGS SYTAGNGNGF 120 KLWEESAGNK GKTGKENIAG NRHIIRDVVS VKVEPKPDQT PNILRSKHSA TEQRRRSKIN 180 DRFSMLRDII PHGDQKRDKA SFLLEVIEYI QFLQEKLHKY EDSYQGWSSE PPKTIPWNSQ 240 RPTQVPNGAS GPAMVYAAAK LDENNISIAP NIPREGQNLL DTDMSRLDSI KEIDQSTKEA 300 SSFPMALQPN ICAAAPLSRH EPEFCHSRLC ATDCSVKWDN KLKEQELIIE NGTISISTIY 360 SQGLLSTLTQ ALQSSGVELS RASISIQIDL GKRAYPNSST PNFKKTQIVG VDASGREEEE 420 NDKGLKRLKT SIND

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MELPQPHSYG TQGRKPTHDF LSLRSPAHQD PTLTPPGRYL KTYDLLQPLV GKNGDEIRST  60
EKPMSNILPS GIGSYSINHI SYINQSHRSS KPEAAQSSSS DRNDENSKGS SYTAGNGNGF  120
KLWEESAGNK GKTGKENIAG NRHIIRDVVS VKVEPKPDQT PNILRSKHSA TEQRRRSKIN  180
DRFSMLRDII PHGDQKRDKA SFLLEVIEYI QFLQEKLHKY EDSYQGWSSE PPKTIPWNSQ  240
RPTQVPNGAS GPAMVYAAAK LDENNISIAP NIPREGQNLL DTDMSRLDSI KEIDQSTKEA  300
SSFPMALQPN ICAAAPLSRH EPEFCHSRLC ATDCSVKWDN KLKEQELIIE NGTISISTIY  360
SQGLLSTLTQ ALQSSGVELS RASISIQIDL GKRAYPNSST PNFKKTQIVG VDASGREEEE  420
NDKGLKRLKT SIND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	7e-48	bHLH family protein