PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971494.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 452aa MW: 50064.7 Da PI: 7.3744

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971494.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.7	3.7e-17	183	232	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P+ ++K +Ka+ L +++eYI+ Lq XP_024971494.1 183 RSKHSATEQRRRSKINDRFSMLRDIIPHG----DQKRDKASFLLEVIEYIQFLQ 232 899***********************7....7*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSNILPSGIG SYSINHISYI NQSHRSSKPE AAQSSSSDRN DENSKGSSYT AGNGNGFKLW 60 EESAGNKGKT GKENIAGNRH IIREGDMKIG GVPWITSPSQ SSSIHNHPTT NIGYPWYVGI 120 FCSHSAQKNQ SFVDMLKSAK PSQENVDDND GEFVIKTETS SHRKDVVSVK VEPKPDQTPN 180 ILRSKHSATE QRRRSKINDR FSMLRDIIPH GDQKRDKASF LLEVIEYIQF LQEKLHKYED 240 SYQGWSSEPP KTIPWNSQRP TQVPNGASGP AMVYAAAKLD ENNISIAPNI PREGQNLLDT 300 DMSRLDSIKE IDQSTKEASS FPMALQPNIC AAAPLSRHEP EFCHSRLCAT DCSVKWDNKL 360 KEQELIIENG TISISTIYSQ GLLSTLTQAL QSSGVELSRA SISIQIDLGK RAYPNSSTPN 420 FKKTQIVGVD ASGREEEEND KGLKRLKTSI ND

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSNILPSGIG SYSINHISYI NQSHRSSKPE AAQSSSSDRN DENSKGSSYT AGNGNGFKLW  60
EESAGNKGKT GKENIAGNRH IIREGDMKIG GVPWITSPSQ SSSIHNHPTT NIGYPWYVGI  120
FCSHSAQKNQ SFVDMLKSAK PSQENVDDND GEFVIKTETS SHRKDVVSVK VEPKPDQTPN  180
ILRSKHSATE QRRRSKINDR FSMLRDIIPH GDQKRDKASF LLEVIEYIQF LQEKLHKYED  240
SYQGWSSEPP KTIPWNSQRP TQVPNGASGP AMVYAAAKLD ENNISIAPNI PREGQNLLDT  300
DMSRLDSIKE IDQSTKEASS FPMALQPNIC AAAPLSRHEP EFCHSRLCAT DCSVKWDNKL  360
KEQELIIENG TISISTIYSQ GLLSTLTQAL QSSGVELSRA SISIQIDLGK RAYPNSSTPN  420
FKKTQIVGVD ASGREEEEND KGLKRLKTSI ND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	1e-66	bHLH family protein