PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971492.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 507aa MW: 56202.6 Da PI: 7.7474

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.5	4.3e-17	238	287	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P+ ++K +Ka+ L +++eYI+ Lq XP_024971492.1 238 RSKHSATEQRRRSKINDRFSMLRDIIPHG----DQKRDKASFLLEVIEYIQFLQ 287 899***********************7....7*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MELPQPHSYG TQGRKPTHDF LSLRSPAHQD PTLTPPGRYL KTYDLLQPLV GKNGDEIRST 60 EKPMSNILPS GIGSYSINHI SYINQSHRSS KPEAAQSSSS DRNDENSKGS SYTAGNGNGF 120 KLWEESAGNK GKTGKENIAG NRHIIREGDM KIGGVPWITS PSQSSSIHNH PTTNIGYPHS 180 AQKNQSFVDM LKSAKPSQEN VDDNDGEFVI KTETSSHRKD VVSVKVEPKP DQTPNILRSK 240 HSATEQRRRS KINDRFSMLR DIIPHGDQKR DKASFLLEVI EYIQFLQEKL HKYEDSYQGW 300 SSEPPKTIPW NSQRPTQVPN GASGPAMVYA AAKLDENNIS IAPNIPREGQ NLLDTDMSRL 360 DSIKEIDQST KEASSFPMAL QPNICAAAPL SRHEPEFCHS RLCATDCSVK WDNKLKEQEL 420 IIENGTISIS TIYSQGLLST LTQALQSSGV ELSRASISIQ IDLGKRAYPN SSTPNFKKTQ 480 IVGVDASGRE EEENDKGLKR LKTSIND

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MELPQPHSYG TQGRKPTHDF LSLRSPAHQD PTLTPPGRYL KTYDLLQPLV GKNGDEIRST  60
EKPMSNILPS GIGSYSINHI SYINQSHRSS KPEAAQSSSS DRNDENSKGS SYTAGNGNGF  120
KLWEESAGNK GKTGKENIAG NRHIIREGDM KIGGVPWITS PSQSSSIHNH PTTNIGYPHS  180
AQKNQSFVDM LKSAKPSQEN VDDNDGEFVI KTETSSHRKD VVSVKVEPKP DQTPNILRSK  240
HSATEQRRRS KINDRFSMLR DIIPHGDQKR DKASFLLEVI EYIQFLQEKL HKYEDSYQGW  300
SSEPPKTIPW NSQRPTQVPN GASGPAMVYA AAKLDENNIS IAPNIPREGQ NLLDTDMSRL  360
DSIKEIDQST KEASSFPMAL QPNICAAAPL SRHEPEFCHS RLCATDCSVK WDNKLKEQEL  420
IIENGTISIS TIYSQGLLST LTQALQSSGV ELSRASISIQ IDLGKRAYPN SSTPNFKKTQ  480
IVGVDASGRE EEENDKGLKR LKTSIND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	4e-82	bHLH family protein