PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971491.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 511aa MW: 56758.3 Da PI: 7.9728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.5	4.4e-17	242	291	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+++P+ ++K +Ka+ L +++eYI+ Lq XP_024971491.1 242 RSKHSATEQRRRSKINDRFSMLRDIIPHG----DQKRDKASFLLEVIEYIQFLQ 291 899***********************7....7*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MELPQPHSYG TQGRKPTHDF LSLRSPAHQD PTLTPPGRYL KTYDLLQPLV GKNGDEIRST 60 EKPMSNILPS GIGSYSINHI SYINQSHRSS KPEAAQSSSS DRNDENSKGS SYTAGNGNGF 120 KLWEESAGNK GKTGKENIAG NRHIIREGDM KIGGVPWITS PSQSSSIHNH PTTNIGYPWY 180 VGIFCSHSAQ KNQSFVDMLK SAKPSQENVD DNDGEFVIKT ETSSHRKVKV EPKPDQTPNI 240 LRSKHSATEQ RRRSKINDRF SMLRDIIPHG DQKRDKASFL LEVIEYIQFL QEKLHKYEDS 300 YQGWSSEPPK TIPWNSQRPT QVPNGASGPA MVYAAAKLDE NNISIAPNIP REGQNLLDTD 360 MSRLDSIKEI DQSTKEASSF PMALQPNICA AAPLSRHEPE FCHSRLCATD CSVKWDNKLK 420 EQELIIENGT ISISTIYSQG LLSTLTQALQ SSGVELSRAS ISIQIDLGKR AYPNSSTPNF 480 KKTQIVGVDA SGREEEENDK GLKRLKTSIN D

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MELPQPHSYG TQGRKPTHDF LSLRSPAHQD PTLTPPGRYL KTYDLLQPLV GKNGDEIRST  60
EKPMSNILPS GIGSYSINHI SYINQSHRSS KPEAAQSSSS DRNDENSKGS SYTAGNGNGF  120
KLWEESAGNK GKTGKENIAG NRHIIREGDM KIGGVPWITS PSQSSSIHNH PTTNIGYPWY  180
VGIFCSHSAQ KNQSFVDMLK SAKPSQENVD DNDGEFVIKT ETSSHRKVKV EPKPDQTPNI  240
LRSKHSATEQ RRRSKINDRF SMLRDIIPHG DQKRDKASFL LEVIEYIQFL QEKLHKYEDS  300
YQGWSSEPPK TIPWNSQRPT QVPNGASGPA MVYAAAKLDE NNISIAPNIP REGQNLLDTD  360
MSRLDSIKEI DQSTKEASSF PMALQPNICA AAPLSRHEPE FCHSRLCATD CSVKWDNKLK  420
EQELIIENGT ISISTIYSQG LLSTLTQALQ SSGVELSRAS ISIQIDLGKR AYPNSSTPNF  480
KKTQIVGVDA SGREEEENDK GLKRLKTSIN D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	2e-80	bHLH family protein