PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971474.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 368aa MW: 41376.7 Da PI: 8.2408

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115	4.8e-36	26	118	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll++ XP_024971474.1 26 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCE 111 9***************************************************************99.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ XP_024971474.1 112 IHRRKTS 118 **987 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MALMLDNSCE GILLSLDSHK SMPAPFLTKT YQLVDDPTTD HIVSWGEDDT TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTSQP 120 HVGLNHHHFT GIGGGNGFFS YPLTRDSISP TDSDDHVCCD SPPPLSSSTT TGTASTAAGL 180 FGIFPSNSIS SNGRGNSVTA LSEDNERLRR SNNMLMSELA HMRKLYNDVI YYVQNHVKPV 240 APSNSYPSSL LLPSTNGPLM MQKQQQQQQQ QQQPTSFFNA GSNPNVTVVY PSKPQQLQLH 300 DSTINNMVRD QDKVNVINRT KLFGVPLLSK KRLHPEYGSA NTMVEAHKAR LILEKDDLGL 360 KLMPPSPC

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MALMLDNSCE GILLSLDSHK SMPAPFLTKT YQLVDDPTTD HIVSWGEDDT TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FKKGEKHLLC EIHRRKTSQP  120
HVGLNHHHFT GIGGGNGFFS YPLTRDSISP TDSDDHVCCD SPPPLSSSTT TGTASTAAGL  180
FGIFPSNSIS SNGRGNSVTA LSEDNERLRR SNNMLMSELA HMRKLYNDVI YYVQNHVKPV  240
APSNSYPSSL LLPSTNGPLM MQKQQQQQQQ QQQPTSFFNA GSNPNVTVVY PSKPQQLQLH  300
DSTINNMVRD QDKVNVINRT KLFGVPLLSK KRLHPEYGSA NTMVEAHKAR LILEKDDLGL  360
KLMPPSPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-101	HSF family protein