PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971351.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 680aa MW: 78423.1 Da PI: 8.1681

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.7e-21	69	152	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ ++ l+HnH l XP_024971351.1 69 NYYNCYAREAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLVDSRRWRILEVTLDHNHLL 152 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MNHLELIQME EVSPNSKHEI GDEGGEHNLQ EREGEKAELD SENGFPEGKK DFVAPAVGME 60 FESYDDAYNY YNCYAREAGF RVRVKNSWFK RNSREKYGAV LCCSSQGFKR IKDVNRLRKE 120 TRTGCPAMVR MRLVDSRRWR ILEVTLDHNH LLGAKAYRSI KKMGTGGTKK MLQPDSDAEG 180 RTIKLYRALV IDSGGNNGNS NSSGRELGSS SDHHPDRLNL KKGDTQAIYN YICRMQLTNP 240 NFFYLMDLND EGRLRNMIWL DARCRAAIGY FSDVIYFDTT YLSNKYEIPL VTFVGMNHHG 300 QSVLLGCGLL SGETAESYLW VLKAWLTSTS GCVPQTIITD RCRILQSVVS EVFPKSHHRF 360 SLCHIMKKVP EKLGGLRNYD AIRKVLVKTV YETLKPFDFE SSWGFMIQRF GIGEHEWLRS 420 LYEDRAWWAP VYLKDTSFAG MAAASQPGET LHPIFDKYIH KQTPLKEFLD KYELAMQKKH 480 KEEAAADSES RNSSPTLKTR CSFELQLSKV YTREIFKKFQ VEVEEMYSCF STTQLHVDGP 540 VIIFLVKERF LGDGNRREVK DYEVLYNRAA ADVRCICSCF NFNGYLCRHA LCVLNFNGVE 600 QIPSKYILSR WKRDYKRLFV SDHVGSNNDY GSDAVQWFHQ LYRSSLQVVE EGVISLNHYK 660 AAIQTFEECL NRVHNIEDKT

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MNHLELIQME EVSPNSKHEI GDEGGEHNLQ EREGEKAELD SENGFPEGKK DFVAPAVGME  60
FESYDDAYNY YNCYAREAGF RVRVKNSWFK RNSREKYGAV LCCSSQGFKR IKDVNRLRKE  120
TRTGCPAMVR MRLVDSRRWR ILEVTLDHNH LLGAKAYRSI KKMGTGGTKK MLQPDSDAEG  180
RTIKLYRALV IDSGGNNGNS NSSGRELGSS SDHHPDRLNL KKGDTQAIYN YICRMQLTNP  240
NFFYLMDLND EGRLRNMIWL DARCRAAIGY FSDVIYFDTT YLSNKYEIPL VTFVGMNHHG  300
QSVLLGCGLL SGETAESYLW VLKAWLTSTS GCVPQTIITD RCRILQSVVS EVFPKSHHRF  360
SLCHIMKKVP EKLGGLRNYD AIRKVLVKTV YETLKPFDFE SSWGFMIQRF GIGEHEWLRS  420
LYEDRAWWAP VYLKDTSFAG MAAASQPGET LHPIFDKYIH KQTPLKEFLD KYELAMQKKH  480
KEEAAADSES RNSSPTLKTR CSFELQLSKV YTREIFKKFQ VEVEEMYSCF STTQLHVDGP  540
VIIFLVKERF LGDGNRREVK DYEVLYNRAA ADVRCICSCF NFNGYLCRHA LCVLNFNGVE  600
QIPSKYILSR WKRDYKRLFV SDHVGSNNDY GSDAVQWFHQ LYRSSLQVVE EGVISLNHYK  660
AAIQTFEECL NRVHNIEDKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein