PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971342.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 558aa MW: 61326.3 Da PI: 8.1707

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_024971342.1 88 FVCEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	12.6	0.00042	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_024971342.1 165 WKCDKCSKRYAVQSDWKAHSKTC 187 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MMKQQKVILE KNMSNLSSAS ADLHANNSCS ENKDQENGNH QQSYFEHPDH PTQSQPQLKR 60 KRSLPGNPDP EAEVISLSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN 120 KNEVVKKKVY VCPEVNCVHH EPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW 180 KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEEN ARAISGIDPT MNPVIQIPTH 240 FNDVHLLDLI HTSLLKKGEH PFPTWLPPPP PSFEHINGSG PGSGSGRNSG HQAFLAQTQS 300 QEQDHGSPSS TSTSHGGSGP TLITYHPAPS AYMSATALLQ KAAQMGTSHL SRPGTSLQAP 360 CTTSSSSMAI SRTHHHHHQQ YYQAHVSANS EAAGNNNGGT LLDPNQQQQI LMGLASFGNV 420 KDGGACAGGP SSSSSSPPHH HPYPSPAFLH HPMNMNINNM MMMNPDGFAD VSMFEDAFSQ 480 ILDAKKEDDD HDHHGNLHES HPSSKLHHHH MMMEDNKSGN GGNIGGRNGG NEGMTRDFLG 540 LKAPSHDSHG TTVTKAGL

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MMKQQKVILE KNMSNLSSAS ADLHANNSCS ENKDQENGNH QQSYFEHPDH PTQSQPQLKR  60
KRSLPGNPDP EAEVISLSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN  120
KNEVVKKKVY VCPEVNCVHH EPSRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEEN ARAISGIDPT MNPVIQIPTH  240
FNDVHLLDLI HTSLLKKGEH PFPTWLPPPP PSFEHINGSG PGSGSGRNSG HQAFLAQTQS  300
QEQDHGSPSS TSTSHGGSGP TLITYHPAPS AYMSATALLQ KAAQMGTSHL SRPGTSLQAP  360
CTTSSSSMAI SRTHHHHHQQ YYQAHVSANS EAAGNNNGGT LLDPNQQQQI LMGLASFGNV  420
KDGGACAGGP SSSSSSPPHH HPYPSPAFLH HPMNMNINNM MMMNPDGFAD VSMFEDAFSQ  480
ILDAKKEDDD HDHHGNLHES HPSSKLHHHH MMMEDNKSGN GGNIGGRNGG NEGMTRDFLG  540
LKAPSHDSHG TTVTKAGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-106	C2H2 family protein