PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971333.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 1586aa MW: 173295 Da PI: 6.1387

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.7	3.2e-09	779	820	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e+++d + ++G++ +++Ia+ + ++t +c+++++k XP_024971333.1 779 PWTSEEKEIFLDKFSLFGKD-FRSIASFLE-HKTVADCVEFYYK 820 8***************99.*****.*********98 PP
2	Myb_DNA-binding	29.8	1.4e-09	1002	1042	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++a + +G++ ++ I+r+m +R++ qck ++ XP_024971333.1 1002 DWTDEEKSSFLHALRSYGKD-FSMISRCMR-TRSRDQCKVFFS 1042 6***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1586 aa Download sequence
MPPEPLPFDR KDFFKERKPS SSDPAGVVPA RWREPPTTPS SHPNNHGPFS YRLGGAGGSS 60 DFRRPISGLN IAAEGHGKQV GGGWHATAVE SGPREDKLCR NDSSRENNHS SSGALASISQ 120 KDRKGGNSRE TTVSPHGNFH PHPDFINSWD QLQSKDLHDK NNGGGVCTTG GQRLENESSL 180 GSSIDWKPLK WIRSGSLSSR GSGFSHSSSS KSIGMDSLDM KIDVPPGNST PLQSPSGDAG 240 PCLTPRTPAD EVSSRKKPRL GWGEGLAKYE KKKVGPDDIV DKDAETKNGT VDGVSSLEPL 300 LPSPNLPDKS PSLNGCSECA SPATPYSFAC SSSPGLEEKA STKTAAIDND ICNPCVPSCH 360 VSHEHTEGST FNLENLELTE VVNLSSSLNE LLQSDDTSGP TSGFVRSTAM DKLQVWKADI 420 SRTLEITESE IDSLENELKL LVSDVGGSCS LPAASCSLPT KCNVKNTDRI SGSLPLRIIA 480 SGDTLTEKAD GSVELAGVED LDRESPGTAT SKFVEPFTLC DITPSDVVEQ RDSSCILHIR 540 SENMEAKCSG DNVCNDILGV VTACGDGSQL PADGCMSLVP VSGDVHYSRT DNLYELVFDS 600 NKVLASVASD EFRKLLPSNQ WCNYTPRVTN DSQIKEKFAM RKRFLKFKER AITLKFRAFQ 660 YLWKEDLRLL SVPRFGAKSQ KKFELSSRMG YPDYQKHRSS IRSRFSYPDG NLSLVPTREI 720 IDYASKLLSD SHVRVHRNTL KMPSLILDKR ERATSRFISD NGLVENPCDV ELERSVINPW 780 TSEEKEIFLD KFSLFGKDFR SIASFLEHKT VADCVEFYYK NHKSDRFQKT KKHPEFAKQG 840 KSHSTNTYLV TSGKRWNREM NAASLDMLGA ASAMAANVDG GKERRQKCPS KFYIGTSRDH 900 KLQRVDGGIL ERSDNLVMSC NERETAAADV LAGICGSISS EALSSCITSL ADPGDVYHQD 960 RICQKLGGSS TRQPATPDGS QNDVDEETCS DDSCGGEMGP SDWTDEEKSS FLHALRSYGK 1020 DFSMISRCMR TRSRDQCKVF FSKARKCLGL DAIYLERGKE GTMGGNRGGG SDHDDTCMVD 1080 SGSVISCDKS SSEFKVDVED LHSSDSKQEL AESDRIVASR ESEFGSENLV SHGCEAENKP 1140 EIDLVGGKNS NGNFEEAADS EATGAANIEE ASRNTYSEGS VRETNDQASA SGAKAEVDTV 1200 DKVSSKICRE EIQESEHQLA SWNSNTSEVR ALNACSAEDL NSASHYSRGS SLDLSIDPGN 1260 SLELNGVENP CEGNNGFLAS NLVCRDPIVS PHRKTLSQDD TSSGSLSFRK SLSQRSSSTD 1320 GYHLHLPKHS LMDCVESSHI LRGYPVTVST NKGVSGSLGQ NEFKLDKSLP LEQCLPRDCS 1380 LQMCTSSLSH EQRQGEVGKP GDVKLFGQIL TNPLSNGKFE KPNGRKSFNL KFDNRSSDRN 1440 LASLDLDNHG FGVKKNVPLR SYGFWDGNRI QTGFSSLPPD SSVLLAKYPA AFGNTTKLEE 1500 SHSFVNEQLK GFHQSREVNR CSNYHNAYMS QEGIQPFTVD KLLLSEIPRR KDSEGGRVMV 1560 SDPVAAIRMH YAKTTEQYKN GNSNSR

Sequence ? help Back to Top

Protein Sequence Length: 1586 aa Download sequence

MPPEPLPFDR KDFFKERKPS SSDPAGVVPA RWREPPTTPS SHPNNHGPFS YRLGGAGGSS  60
DFRRPISGLN IAAEGHGKQV GGGWHATAVE SGPREDKLCR NDSSRENNHS SSGALASISQ  120
KDRKGGNSRE TTVSPHGNFH PHPDFINSWD QLQSKDLHDK NNGGGVCTTG GQRLENESSL  180
GSSIDWKPLK WIRSGSLSSR GSGFSHSSSS KSIGMDSLDM KIDVPPGNST PLQSPSGDAG  240
PCLTPRTPAD EVSSRKKPRL GWGEGLAKYE KKKVGPDDIV DKDAETKNGT VDGVSSLEPL  300
LPSPNLPDKS PSLNGCSECA SPATPYSFAC SSSPGLEEKA STKTAAIDND ICNPCVPSCH  360
VSHEHTEGST FNLENLELTE VVNLSSSLNE LLQSDDTSGP TSGFVRSTAM DKLQVWKADI  420
SRTLEITESE IDSLENELKL LVSDVGGSCS LPAASCSLPT KCNVKNTDRI SGSLPLRIIA  480
SGDTLTEKAD GSVELAGVED LDRESPGTAT SKFVEPFTLC DITPSDVVEQ RDSSCILHIR  540
SENMEAKCSG DNVCNDILGV VTACGDGSQL PADGCMSLVP VSGDVHYSRT DNLYELVFDS  600
NKVLASVASD EFRKLLPSNQ WCNYTPRVTN DSQIKEKFAM RKRFLKFKER AITLKFRAFQ  660
YLWKEDLRLL SVPRFGAKSQ KKFELSSRMG YPDYQKHRSS IRSRFSYPDG NLSLVPTREI  720
IDYASKLLSD SHVRVHRNTL KMPSLILDKR ERATSRFISD NGLVENPCDV ELERSVINPW  780
TSEEKEIFLD KFSLFGKDFR SIASFLEHKT VADCVEFYYK NHKSDRFQKT KKHPEFAKQG  840
KSHSTNTYLV TSGKRWNREM NAASLDMLGA ASAMAANVDG GKERRQKCPS KFYIGTSRDH  900
KLQRVDGGIL ERSDNLVMSC NERETAAADV LAGICGSISS EALSSCITSL ADPGDVYHQD  960
RICQKLGGSS TRQPATPDGS QNDVDEETCS DDSCGGEMGP SDWTDEEKSS FLHALRSYGK  1020
DFSMISRCMR TRSRDQCKVF FSKARKCLGL DAIYLERGKE GTMGGNRGGG SDHDDTCMVD  1080
SGSVISCDKS SSEFKVDVED LHSSDSKQEL AESDRIVASR ESEFGSENLV SHGCEAENKP  1140
EIDLVGGKNS NGNFEEAADS EATGAANIEE ASRNTYSEGS VRETNDQASA SGAKAEVDTV  1200
DKVSSKICRE EIQESEHQLA SWNSNTSEVR ALNACSAEDL NSASHYSRGS SLDLSIDPGN  1260
SLELNGVENP CEGNNGFLAS NLVCRDPIVS PHRKTLSQDD TSSGSLSFRK SLSQRSSSTD  1320
GYHLHLPKHS LMDCVESSHI LRGYPVTVST NKGVSGSLGQ NEFKLDKSLP LEQCLPRDCS  1380
LQMCTSSLSH EQRQGEVGKP GDVKLFGQIL TNPLSNGKFE KPNGRKSFNL KFDNRSSDRN  1440
LASLDLDNHG FGVKKNVPLR SYGFWDGNRI QTGFSSLPPD SSVLLAKYPA AFGNTTKLEE  1500
SHSFVNEQLK GFHQSREVNR CSNYHNAYMS QEGIQPFTVD KLLLSEIPRR KDSEGGRVMV  1560
SDPVAAIRMH YAKTTEQYKN GNSNSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-142	MYB family protein