PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 233aa    MW: 25163.1 Da    PI: 7.8553
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.43.8e-4681071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+
  XP_024971330.1   8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLS 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  XP_024971330.1 103 YAKSE 107
                     99987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MASSSTSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HKVFGASNVT KLLNELHPHQ  60
REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQMD LSYAKSELSK YQSHNLNGSA  120
TQGLIAAAAA AAAATHHHHH HQTLGNNLIG CCGGGVVSRD HLYHHHSPFF PTRDQQTAAI  180
RAFDVNSSYD GTTGGGAGVL AMNASTGCIG QHPQFQQPRA AGNDDRPTPI DPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.33e-76LBD family protein