PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971264.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 414aa MW: 47890.1 Da PI: 6.1609

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.7	2e-25	65	153	1	87
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r+++++ +r+ ++ k+plW+e+s+ m e g++rs +Ckek+enl k+ykk+k+g+ ++ + +++++f qlea XP_024971264.1 65 RWPRQETLSLLEIRSRLDSCFREassSNHKAPLWDEISRIMnDEYGYQRSGRKCKEKFENLYKYYKKTKDGKVGK--HDGKHYRFFGQLEA 153 8*******************8443579********8899************************96..56667****985 PP
2	trihelix	38.4	3.3e-12	310	377	2	67
trihelix 2 WtkqevlaLiearremeerlrrgklk..kplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 W++ e+ Li +r +++ ++r+g ++ + Wee++ ++ g++r+ + Cke we+l ++ k k XP_024971264.1 310 WSEPEISSLIHIRINKDGKFRDGDQEdgERIWEEIAFELSLLGYNRNGIDCKEAWEKLCVDFNKSKME 377 *******************9876644788*****************************999865 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MHQMLNPNDP PQPPAHTFHD NATTVSPPTP PPPPYLAQTG WNAGGGGVIN LNHRTNSYAA 60 STTIRWPRQE TLSLLEIRSR LDSCFREASS SNHKAPLWDE ISRIMNDEYG YQRSGRKCKE 120 KFENLYKYYK KTKDGKVGKH DGKHYRFFGQ LEALFGDQQR TTVAYPISQS NYSSEYGTPS 180 NEKNRRTDYE FETDEFIAAI QDSIDSQLSK LMVKQDEWGE KILCAIDRKD QERVVMDEEW 240 RKREAARLAH EYESWANHVA RIETRDKSLL DALQNLIRVR SRGSSYRDMD PVANPKGNEC 300 SDHRDKRKDW SEPEISSLIH IRINKDGKFR DGDQEDGERI WEEIAFELSL LGYNRNGIDC 360 KEAWEKLCVD FNKSKMECEI VSKEVSSRTS NAVDDNDDRN SCLRAMTMNI DGER

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MHQMLNPNDP PQPPAHTFHD NATTVSPPTP PPPPYLAQTG WNAGGGGVIN LNHRTNSYAA  60
STTIRWPRQE TLSLLEIRSR LDSCFREASS SNHKAPLWDE ISRIMNDEYG YQRSGRKCKE  120
KFENLYKYYK KTKDGKVGKH DGKHYRFFGQ LEALFGDQQR TTVAYPISQS NYSSEYGTPS  180
NEKNRRTDYE FETDEFIAAI QDSIDSQLSK LMVKQDEWGE KILCAIDRKD QERVVMDEEW  240
RKREAARLAH EYESWANHVA RIETRDKSLL DALQNLIRVR SRGSSYRDMD PVANPKGNEC  300
SDHRDKRKDW SEPEISSLIH IRINKDGKFR DGDQEDGERI WEEIAFELSL LGYNRNGIDC  360
KEAWEKLCVD FNKSKMECEI VSKEVSSRTS NAVDDNDDRN SCLRAMTMNI DGER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	8e-54	Trihelix family protein