PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971260.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 318aa    MW: 36210.1 Da    PI: 6.5181
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.32.3e-4391351127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeel++++L+ k++g + e+ + i+evdi+k+ePwdLp  +++++ ++ew+fF ++d+k  +g+r+ ratk gyWk tg+d++++
  XP_024971260.1   9 LPVGYRFRPTDEELINHFLRLKINGYHKEV-DYIQEVDICKTEPWDLPglSQIESIDDEWFFFNRKDHK--NGHRSARATKCGYWKPTGRDRTIK 100
                     799************************999.99***************6448888889*******9997..689********************9 PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     ++ +  ++g kktLvf++gr+pkg++t+Wv+hey 
  XP_024971260.1 101 TSkGFLEIGKKKTLVFHTGRSPKGVRTRWVIHEYV 135
                     9734456***************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MEVGPVYTLP VGYRFRPTDE ELINHFLRLK INGYHKEVDY IQEVDICKTE PWDLPGLSQI  60
ESIDDEWFFF NRKDHKNGHR SARATKCGYW KPTGRDRTIK TSKGFLEIGK KKTLVFHTGR  120
SPKGVRTRWV IHEYVPTLNE LDGTAPGQTP FVLCRLFKKH DGKDKNPESA APPPLPPPPP  180
PPPPPSTTED GIDIRGVEWD FPEVERALDD LWDPSSEHGL VVNKQQEPST FIRVGNYSVQ  240
NKYNGKVILN LDEKLSPTAS DVASTMNWDS DEVYNAEIIA REPLLSWKAI EIGGEESLLL  300
RGMRKVLGCL GLWKCFNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.18e-69NAC family protein