PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971253.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 356aa    MW: 38413 Da    PI: 8.8357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000392532911255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ +++l+ +      +K + a++L +A+ YIk Lq
  XP_024971253.1 253 RKEKLGDRIAAIQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 291
                     5567778999999999887.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MAQDLGFPWS SSSSNNGMGY PIDNFMTHEL QRLSRIKDEF SVSESYPKFL DMLNCSPTSS  60
IEDLQLHPSS SYVKNDHHQQ ISYSNNNQDF LLTTLSSTGC QIKGGQLIND QNCSNGIFSQ  120
NFPTISISSL NQSSSSSSSS SSGISSSSFD MNSLPALDLF GSPRFDGSFT HPSSLNGHTN  180
LGCLSYGLNS MHQPSHRPSV CPSKISSIST AGSTGQPAKR PASKFINAKA TQSVSVKKSK  240
LEPRPSSAPF QVRKEKLGDR IAAIQQLVAP FGKTDTASVL MEAIGYIKFL QTQVETLSVP  300
YMKSTDKTSG IPTRRGHLGE GNKETKRDLR SRGLCLVPLS CLSYITGGGE GIWPGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-45bHLH family protein