PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024971124.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30627.6 Da    PI: 7.8511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024971124.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.76.2e-16127180256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Lee F+++++++  +++ LA++l+L  rqV vWFqNrRa+ k
  XP_024971124.1 127 RKKLRLTKEQSFVLEETFKQHSTLNP-RKQSLAESLNLRPRQVEVWFQNRRARTK 180
                     78889*******************96.679***********************98 PP
2HD-ZIP_I/II112.62.6e-36127214189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq+ +LEe+F+++++L+p rK++la++L+l+prqv+vWFqnrRARtk+kq E+d++ Lk++++al+++n+rL++e +eL++
  XP_024971124.1 127 RKKLRLTKEQSFVLEETFKQHSTLNP-RKQSLAESLNLRPRQVEVWFQNRRARTKLKQNEVDCALLKKCCEALASDNKRLKTEIQELKA 214
                     69***********************9.689*********************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MVPEVSCITS LNLSLTGDHS YPINHLLDLH DHDLDQQHHH QQLEEKSSIM YDHLLPSLTL  60
GLGRDQDPSK LIHQATSNSI VSTVSSFSNS TSAKRVERDG GGEEVEKTLS SKTINDIDQD  120
EFEGGSRKKL RLTKEQSFVL EETFKQHSTL NPRKQSLAES LNLRPRQVEV WFQNRRARTK  180
LKQNEVDCAL LKKCCEALAS DNKRLKTEIQ ELKAGKTTTI SPQFYMQFPA ATQTMCPSCE  240
RIVSGSDTTM PFKTPFSRAP KSLAHRFTQL C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132SRKKLRL
2175183RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-53HD-ZIP family protein