PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024971043.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 344aa MW: 38737.4 Da PI: 7.1695

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024971043.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.2	1.1e-28	49	120	2	66
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl k i++l+ + + XP_024971043.1 49 FGGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLDSTKDDIDKLPPLqmitgdfN 120 689**********************************************************99944444440 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MFNNTSGRKD FRAKQEGDSN EPMVPKHTSM SRQWAGFKNP RIVRVSKAFG GKDRHSKVCT 60 VKGLRDRRIR LSVPTAIQLY DLQDRLGLNQ PSKVIDWLLD STKDDIDKLP PLQMITGDFN 120 QLHPVPALVP QDLNSPQISF SQFLSTPNTA FIKDVGNRTL LYTKQGMKHD NDIDNDINIG 180 DHQRLKGKEA IVESKWNDQE ENGDGNGGLN FFPIPQFSYP GLLPYNHYYN WEPPSNLSIS 240 QFGNQGLVPS QTDSSTTLPS ASQFFLCPPA ATTPSPFPPY LMPTLGENQD LIRQNNHFHL 300 LTSSSQHVPP NSLMPLLHLS DSQEKVSFSL DAHPKVHQQN NDDR

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MFNNTSGRKD FRAKQEGDSN EPMVPKHTSM SRQWAGFKNP RIVRVSKAFG GKDRHSKVCT  60
VKGLRDRRIR LSVPTAIQLY DLQDRLGLNQ PSKVIDWLLD STKDDIDKLP PLQMITGDFN  120
QLHPVPALVP QDLNSPQISF SQFLSTPNTA FIKDVGNRTL LYTKQGMKHD NDIDNDINIG  180
DHQRLKGKEA IVESKWNDQE ENGDGNGGLN FFPIPQFSYP GLLPYNHYYN WEPPSNLSIS  240
QFGNQGLVPS QTDSSTTLPS ASQFFLCPPA ATTPSPFPPY LMPTLGENQD LIRQNNHFHL  300
LTSSSQHVPP NSLMPLLHLS DSQEKVSFSL DAHPKVHQQN NDDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-46	TCP family protein