PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024971040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24681.1 Da PI: 8.0695 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 47 | 147 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r +a++slvyeA +r+rdPvyG++g i++lqqq++ l+ael+ XP_024971040.1 47 PCAACKLLRRRCAQECPFSPYFSPHEPHKFACVHKVFGASNVSKLLMEVPECQRAEAANSLVYEASIRLRDPVYGCMGAISALQQQVQFLEAELN 141 7********************************************************************************************** PP DUF260 96 llkeel 101 l+++++ XP_024971040.1 142 LVRSQI 147 *99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MFDELVLMYR ERVDETGKKF KRDINASAQL GRRHVFGSLG TLNTISPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPHKFACVH KVFGASNVSK LLMEVPECQR AEAANSLVYE ASIRLRDPVY 120 GCMGAISALQ QQVQFLEAEL NLVRSQILRY KFRDNNQQDD HHILPSSHDH LAVLSTGAVS 180 IAAPPPPLPL PRSSSSSTYT LQTTTTTDYS TITSDNISYF A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-72 | LBD family protein |