PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970964.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C3H

Protein Properties

Length: 576aa MW: 64113.2 Da PI: 4.6508

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	41.1	3e-13	247	269	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C++++rtG Ck+G++CkF+H+ XP_024970964.1 247 EDCSYYMRTGMCKFGSNCKFNHP 269 89********************9 PP
2	zf-CCCH	28.2	3.3e-09	293	317	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+f++ +G CkyG +CkF+H++ XP_024970964.1 293 QIECKFYLSSGGCKYGKSCKFNHSR 317 568********************95 PP
3	zf-CCCH	39.4	1e-12	337	362	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G CkyG++C+F+H+ XP_024970964.1 337 PGERECPYYMRNGSCKYGPNCRFNHP 362 5789*********************9 PP
4	zf-CCCH	34.1	4.7e-11	480	506	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Cky CkF+H++ XP_024970964.1 480 PGQPECSYFMKTGDCKYRTACKFHHPK 506 5789*********************96 PP
5	zf-CCCH	32.9	1.1e-10	528	551	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+CkyG+ Ck+ H+ XP_024970964.1 528 QNICTHYSRYGICKYGPACKYDHP 551 679********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MEAFQQKSLV DDQQQHLDLG LLSDPPIDND KIVDILALEL ENLVIACKDE VIDRDLSGSS 60 VVMDDDDEVK RAIDEELRQL VVKEAANEAF QAESLSGSGE NNCRDVKQFV DEAIERHGLI 120 KVIEEDPKEC RVLEEPEVGE GGIGCGKEEE KVVDDDEKVF KHGEDLKEKH EIEIEDGGGS 180 SEIVGYENNG EERRSEDGND REFQIIEDLE NGSENAGGES EDGGGLGMVP DDGRLKRYYY 240 PLRPDAEDCS YYMRTGMCKF GSNCKFNHPL RRRNQPSKET KKQMEEPLER PGQIECKFYL 300 SSGGCKYGKS CKFNHSRGKT AVTPVAEYNF LGLPIRPGER ECPYYMRNGS CKYGPNCRFN 360 HPDPTAVGGG DAPPTYGNDG PVPLQNASQA NIPSWSVPRT PDGSAAFLPV IYSPTQSMPP 420 PNPDWNGYQT PAPPPAHVYP NSERGLPIPP AFFLNNPPSD TSLYTHHQQQ MLVSDYPERP 480 GQPECSYFMK TGDCKYRTAC KFHHPKSRIT KTPPSVLSDK GLPLRPDQNI CTHYSRYGIC 540 KYGPACKYDH PANYSNSIPP AGERYGSDGP LMQQSV

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MEAFQQKSLV DDQQQHLDLG LLSDPPIDND KIVDILALEL ENLVIACKDE VIDRDLSGSS  60
VVMDDDDEVK RAIDEELRQL VVKEAANEAF QAESLSGSGE NNCRDVKQFV DEAIERHGLI  120
KVIEEDPKEC RVLEEPEVGE GGIGCGKEEE KVVDDDEKVF KHGEDLKEKH EIEIEDGGGS  180
SEIVGYENNG EERRSEDGND REFQIIEDLE NGSENAGGES EDGGGLGMVP DDGRLKRYYY  240
PLRPDAEDCS YYMRTGMCKF GSNCKFNHPL RRRNQPSKET KKQMEEPLER PGQIECKFYL  300
SSGGCKYGKS CKFNHSRGKT AVTPVAEYNF LGLPIRPGER ECPYYMRNGS CKYGPNCRFN  360
HPDPTAVGGG DAPPTYGNDG PVPLQNASQA NIPSWSVPRT PDGSAAFLPV IYSPTQSMPP  420
PNPDWNGYQT PAPPPAHVYP NSERGLPIPP AFFLNNPPSD TSLYTHHQQQ MLVSDYPERP  480
GQPECSYFMK TGDCKYRTAC KFHHPKSRIT KTPPSVLSDK GLPLRPDQNI CTHYSRYGIC  540
KYGPACKYDH PANYSNSIPP AGERYGSDGP LMQQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-125	C3H family protein