PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970902.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 341aa MW: 38484.5 Da PI: 9.0293

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.5e-15	42	101	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ ++ Aa a++ a++k++g XP_024970902.1 42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEKAAAHAYDLAALKYWG 101 57*****************999955656446******99***********98 PP
2	AP2	51.3	2.8e-16	144	195	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_024970902.1 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 195 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MAKISQKKNA ASNGNNETKP VIGKPKRTRK TVQRDSPPQR SSIYRGVTRH RWTGRYEAHL 60 WDKNCWNESQ NKKGRQVYLG AYDDEKAAAH AYDLAALKYW GQDTILNFPL ETYKEELRGM 120 EGLSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQE 180 EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LRPNQTDPNN SNGIQINPSQ HPGSSSLSNN 240 QNQQPESSSS GETTTSIPPP PSSALGLLLQ SPKYKEMMEM TSAVDSPSTP PESDRPRRSF 300 PDDIQTNFYC HDSNSYAEGD DNIFADLNSF SAPMFESELD A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-106	AP2 family protein