PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970856.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 366aa MW: 42827.4 Da PI: 5.9551

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk+++++++l +vi+++d+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_024970856.1 7 VPPGFRFHPTDEELVDYYLRKKINSRRIDL-DVIRDIDLYKIEPWDLQElcRLGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 100 69**************************.9***********954544442566******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ lvg++ktLvfykgrap+g+k+dW+mheyrle XP_024970856.1 101 YS-KNDLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .8899****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MDTFSHVPPG FRFHPTDEEL VDYYLRKKIN SRRIDLDVIR DIDLYKIEPW DLQELCRLGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKNDLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLESDEN GTTTQEEGWV VCRVFKKRLP TMRRASEHES PIWYDDQVSF 180 MPDIDSPNQN NSYSHLANYN YQYPYGSCKK ELDQLQNYQI TPDHFLQLPL LESPKLLPTC 240 NSTMPIYGIN INQAGSINYQ PSLLTQDQNN NNIHQNQDQN VNNQVTDWRV LDKFVASQLL 300 SHGDVSTKEN HYANIEDNSP IFHSHDDHDT SNSELITHLN KQEHERSTVP EDASNSISTC 360 HIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MDTFSHVPPG FRFHPTDEEL VDYYLRKKIN SRRIDLDVIR DIDLYKIEPW DLQELCRLGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSKNDLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLESDEN GTTTQEEGWV VCRVFKKRLP TMRRASEHES PIWYDDQVSF  180
MPDIDSPNQN NSYSHLANYN YQYPYGSCKK ELDQLQNYQI TPDHFLQLPL LESPKLLPTC  240
NSTMPIYGIN INQAGSINYQ PSLLTQDQNN NNIHQNQDQN VNNQVTDWRV LDKFVASQLL  300
SHGDVSTKEN HYANIEDNSP IFHSHDDHDT SNSELITHLN KQEHERSTVP EDASNSISTC  360
HIDLWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-100	NAC family protein