PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970817.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 339aa MW: 38080.9 Da PI: 7.5241

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6e-09	169	216	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ ++P + +k Ka +L + ++Y++sLq XP_024970817.1 169 SHSLAERVRREKISERMKLLQAIVPGC----DKVTGKALMLDEIINYVQSLQ 216 8***********************9....555***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MAAFTYQQHH SFLLDQAVFF PSSTTSTTAA ATTTTCFPQF HQPNDHAFQG HHHELITTKV 60 TVHSNNNIDQ ASVANKLQSP DSSMSMVLDD QKVESGNELL AKKRKDKHMS SLNHAQSKDT 120 SNRMKKQKKM NDYQEEKKKK TIKKGSSSEE EGAIGYIHVR ARRGQATDSH SLAERVRREK 180 ISERMKLLQA IVPGCDKVTG KALMLDEIIN YVQSLQNQVE FLSMKLASVN PMLYDFGVDL 240 DAFMLKPDEN MSSMVLPIMP SVQQCSPHGG AATFAPANDN YHHQLIDGSS SSANSLLFQQ 300 LQMPNILSQD NGQQLWDVDD QRLKLDNRFL LTNNLTSFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	128	KKRKDKHMSSLNHAQSKDTSNRMKKQK
2	102	143	KKRKDKHMSSLNHAQSKDTSNRMKKQKKMNDYQEEKKKKTIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-49	bHLH family protein