PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970780.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 322aa MW: 36481 Da PI: 4.3113

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.8e-19	88	141	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ e++ +LAk lgL+ rq+ +WFqNrRa++k XP_024970780.1 88 KKRRLKADQVQFLEKSFETENKLEPERKIQLAKDLGLQPRQIAIWFQNRRARWK 141 566899***********************************************9 PP
2	HD-ZIP_I/II	123.9	7.4e-40	87	177	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE+sFe+e+kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+ L+++y+ lk++ e+L +e+e+L++e+ XP_024970780.1 87 EKKRRLKADQVQFLEKSFETENKLEPERKIQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYDILQESYNLLKANYENLLQEKEKLKSEV 177 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MAARSFLYGG DSGGFNSALL TNKRAPCSSS SKPLDSFFIS GSSHSLGSRS MVSFEDGGNG 60 SGRTLFQTFD QEDIGDDEYE DYFHHPEKKR RLKADQVQFL EKSFETENKL EPERKIQLAK 120 DLGLQPRQIA IWFQNRRARW KTKQLEKDYD ILQESYNLLK ANYENLLQEK EKLKSEVLDL 180 SDKLLLQESE KGTSDSSSTK SLSEPLQQEQ IADCVNDEDV SKTSDIAVNG VQSILEQGDS 240 SYMFDQDHSD ESLDEDDNFG KMFATPVNGY MLPPKIKTGE YPELDAVNSC YLGFPGHDED 300 HDQIQDPIHD EDQSFGFWSL LS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	KKRRLK
2	136	144	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-44	HD-ZIP family protein