PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970773.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 303aa MW: 34587.1 Da PI: 4.8201

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.1e-19	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe +++++ +++ + A+ lgL+ rqV +WFqNrRa++k XP_024970773.1 65 KKRRLSNHQVKSLEKIFEVDNKLDPDRKVKVAQDLGLQPRQVAIWFQNRRARWK 118 45689************************************************9 PP
2	HD-ZIP_I/II	124.9	3.8e-40	65	156	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++qvk+LE+ Fe ++kL+p+rKv++a++Lglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++yd+lk++ ++Le+e+e++ +el e XP_024970773.1 65 KKRRLSNHQVKSLEKIFEVDNKLDPDRKVKVAQDLGLQPRQVAIWFQNRRARWKTKQLERDYTLLKSSYDTLKQNYHKLEQEKETIIKELVE 156 9***********************************************************************************99988865 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MKRNFNCSDS LTHFLSHPLE AEMKAEEECI YNGEFQSMVD GGGGGGGGGD GEDYGGEETG 60 QFGDKKRRLS NHQVKSLEKI FEVDNKLDPD RKVKVAQDLG LQPRQVAIWF QNRRARWKTK 120 QLERDYTLLK SSYDTLKQNY HKLEQEKETI IKELVELKAK LHEGTTERND EFEDRENALF 180 LGSDPTNTNH EVYTSLNYEK TRKLLDLKDG FSDSDSSGVL NDENMNVNNP RGSPFLNMKN 240 FGLSASLCSS SATTSNHTEL VDPRAYQQQS DPYLVSNVEE ESCNIFLVDQ APNLCWYFRD 300 HMN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	94	KKRRLSNHQVKSLEKIFEVDNKLDPDRKVK
2	113	121	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	9e-44	HD-ZIP family protein