PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970735.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 343aa MW: 38238.4 Da PI: 7.5427

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.2	3.9e-54	3	129	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeel+++yL +kv ++++ + ++i evd+++vePw+Lp+ +k +e+ewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_024970735.1 3 MPPGFRFHPTDEELITDYLSNKVVNNTFFA-KAIGEVDMNRVEPWELPRLAKMGEQEWYFFCVRDKKYPTGIRTNRATAAGYWKATGKDKEIFR- 95 79***********************888.88***********8888899***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy grapkgekt+Wv+heyrle XP_024970735.1 96 GRSLVGMKKTLVFYMGRAPKGEKTNWVIHEYRLE 129 999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MDMPPGFRFH PTDEELITDY LSNKVVNNTF FAKAIGEVDM NRVEPWELPR LAKMGEQEWY 60 FFCVRDKKYP TGIRTNRATA AGYWKATGKD KEIFRGRSLV GMKKTLVFYM GRAPKGEKTN 120 WVIHEYRLEG KLSLQNLPKS AKNEWVICRV FHKTSGGKKF HISGLSRMDS GSVAGSLPPL 180 MESPVAFGGR MTNSSISVSV QVPCFSNPIE FQTTQKTMIS TFLNNPAFPF DSDSNSNSNS 240 ISISNSNPLL EGQPDLLLQG NHEFPSGSPF PVHDQAILRS LISQGLKMEM EMITGSQDTG 300 LSSAKNTETL SNLEKGKRGT EIEDQEAPST SVGPIDLDCL WNY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MDMPPGFRFH PTDEELITDY LSNKVVNNTF FAKAIGEVDM NRVEPWELPR LAKMGEQEWY  60
FFCVRDKKYP TGIRTNRATA AGYWKATGKD KEIFRGRSLV GMKKTLVFYM GRAPKGEKTN  120
WVIHEYRLEG KLSLQNLPKS AKNEWVICRV FHKTSGGKKF HISGLSRMDS GSVAGSLPPL  180
MESPVAFGGR MTNSSISVSV QVPCFSNPIE FQTTQKTMIS TFLNNPAFPF DSDSNSNSNS  240
ISISNSNPLL EGQPDLLLQG NHEFPSGSPF PVHDQAILRS LISQGLKMEM EMITGSQDTG  300
LSSAKNTETL SNLEKGKRGT EIEDQEAPST SVGPIDLDCL WNY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	1e-122	NAC family protein