PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024970576.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LFY | ||||||||
Protein Properties | Length: 436aa MW: 47667.4 Da PI: 7.3418 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 633.4 | 3.6e-193 | 1 | 410 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap................leaaaaaaarklr.............eleelfkayGvryltva 66 mdp+++saslfkwd+raa a+p+ rl+e ++++++ + a+++ +lee+f+ayGvry+t++ XP_024970576.1 1 MDPDSLSASLFKWDTRAALAQPAGRLYEPITLQQQQqpppppppppphpaamA-------ATSAGmggylvresrdlgGLEEVFHAYGVRYFTAT 88 9***************9998888555444443332223345666655332221.......222113356666888898***************** PP FLO_LFY 67 kiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaa 161 kiaelGft++tL+dmkdeeld++m+sls+ifr+dllvGeryGikaavraerrr eee+ ++rr lls+d++++ldalsqeglseepvq+e+eaa XP_024970576.1 89 KIAELGFTANTLLDMKDEELDEMMNSLSHIFRWDLLVGERYGIKAAVRAERRRQEEED--SRRRYLLSSDTTNTLDALSQEGLSEEPVQQENEAA 181 ******************************************************9988..89999****************************** PP FLO_LFY 162 gsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkse.......ededeeeeededeegsgedgeerqrehPfivtepgevargkknGL 249 gsgg+g g++e++a+++ ++k+ ++++k+ + + + +d+ e+e+ed+ ++g+g g erqrehPfivtepgevargkknGL XP_024970576.1 182 GSGGGG-GAWEMAAMRSCGGGGKTKQG-QRRSKKIGVRGRIGSssqmgggDDNFENESEDDPDNGGGGAGVERQREHPFIVTEPGEVARGKKNGL 274 **9998.89999988863322222222.2222222222211113345554666677778888889999999************************ PP FLO_LFY 250 DYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykpl 344 DYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLdeeasn lrrafkergenvGawrqacykpl XP_024970576.1 275 DYLFHLYEQCRDFLIQVQTIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEEASNGLRRAFKERGENVGAWRQACYKPL 369 *********************************************************************************************** PP FLO_LFY 345 vaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385 v+ia+rqgwdida+fn+hprLsiWYvPtkLrqLCh+ers+a XP_024970576.1 370 VSIASRQGWDIDAIFNTHPRLSIWYVPTKLRQLCHAERSSA 410 **************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence |
MDPDSLSASL FKWDTRAALA QPAGRLYEPI TLQQQQQPPP PPPPPPPHPA AMAATSAGMG 60 GYLVRESRDL GGLEEVFHAY GVRYFTATKI AELGFTANTL LDMKDEELDE MMNSLSHIFR 120 WDLLVGERYG IKAAVRAERR RQEEEDSRRR YLLSSDTTNT LDALSQEGLS EEPVQQENEA 180 AGSGGGGGAW EMAAMRSCGG GGKTKQGQRR SKKIGVRGRI GSSSQMGGGD DNFENESEDD 240 PDNGGGGAGV ERQREHPFIV TEPGEVARGK KNGLDYLFHL YEQCRDFLIQ VQTIAKERGE 300 KCPTKVTNQV FRFAKKAGAS YINKPKMRHY VHCYALHCLD EEASNGLRRA FKERGENVGA 360 WRQACYKPLV SIASRQGWDI DAIFNTHPRL SIWYVPTKLR QLCHAERSSA AIVAAAAAST 420 SVAAGGGGGG GGHLHF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-154 | LFY family protein |