PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024970572.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 253aa MW: 29023.9 Da PI: 10.2637 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.7 | 3.4e-14 | 20 | 103 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Lie ++ +l+rg+l++++W++v+ ++ e + r+ +qCk++++ l+k+yk +k s++p+f++l+ XP_024970572.1 20 CWSEAGTETLIESWGDRYLQLNRGNLRQKDWKDVAHAVnanrDELKPPRTDVQCKNRIDTLKKKYKLEKSKPTP------SKWPFFHRLD 103 7*************************************999889999*******************99987775......68******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MDTNNQTTRH HGGGGGREDC WSEAGTETLI ESWGDRYLQL NRGNLRQKDW KDVAHAVNAN 60 RDELKPPRTD VQCKNRIDTL KKKYKLEKSK PTPSKWPFFH RLDDLIGAAN SVTRKKVSTP 120 KSASVTLTAK SNPKPNLNPN PNFKAIAYSG GSSSHDESLS RMESLDFAEE TTGYKELARA 180 ILRFGEVYKR IEDSKQEEMM KLEKQRMEFT RELEFQRLNM FMETQLELEK MKKKKKKRPS 240 AKASLSPGKN SEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 232 | 238 | KKKKKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 4e-55 | Trihelix family protein |