PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970439.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 390aa MW: 44497.2 Da PI: 4.3967

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.4	1.2e-15	161	245	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ +L+ea ++ + +r++l+ W+ev++++ ++ ++er+ qC+++++ l+k+ykk+k++ ++ + ++++yf++++ XP_024970439.1 161 WSEHETFVLLEAWGDRFLQCGRKSLRSEEWQEVADRVsQDSKIERTDSQCRNRLDTLKKKYKKEKANLERS-RSVNTKWVYFKKMD 245 ***********************************778999*********************986.556669*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MDDTGEDSKY PPNYGLNQGY GSSQHPKASV HNVPYVQSQQ IVKYVDEDDD EVEEDDEEEE 60 EQEQEERNAG DDEMNGAIQK NGDDDNDNDN QYDDINMNDD DDGENHNGRN DTVSLQRHPK 120 KRKLKSLLSS YEFAPRVPPP TMAPTSTAKP SFGGRNTLTD WSEHETFVLL EAWGDRFLQC 180 GRKSLRSEEW QEVADRVSQD SKIERTDSQC RNRLDTLKKK YKKEKANLER SRSVNTKWVY 240 FKKMDMLLSS NPHQTGLSRG VDSGENAFLN PSANGVDEMR DSAGNSDSQD DDDDDSDLVP 300 PKKSKSKADR SGGVSFKLLA DSINKFSEIY EKIENSKIQQ MIELEKMRMD FHRDLELQKR 360 QILDRVQAEI TKARQGDYED NDVSAENIGG

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MDDTGEDSKY PPNYGLNQGY GSSQHPKASV HNVPYVQSQQ IVKYVDEDDD EVEEDDEEEE  60
EQEQEERNAG DDEMNGAIQK NGDDDNDNDN QYDDINMNDD DDGENHNGRN DTVSLQRHPK  120
KRKLKSLLSS YEFAPRVPPP TMAPTSTAKP SFGGRNTLTD WSEHETFVLL EAWGDRFLQC  180
GRKSLRSEEW QEVADRVSQD SKIERTDSQC RNRLDTLKKK YKKEKANLER SRSVNTKWVY  240
FKKMDMLLSS NPHQTGLSRG VDSGENAFLN PSANGVDEMR DSAGNSDSQD DDDDDSDLVP  300
PKKSKSKADR SGGVSFKLLA DSINKFSEIY EKIENSKIQQ MIELEKMRMD FHRDLELQKR  360
QILDRVQAEI TKARQGDYED NDVSAENIGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-61	Trihelix family protein