PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024970417.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 35487.6 Da PI: 6.1789 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 3 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++++G g+W++ ++ g++R++k+c++rw +yl XP_024970417.1 3 KGAWTSEEDQQLINYIQKHGHGSWRSLPKLAGLKRCGKSCRLRWTNYL 50 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 56 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+ +++++ lG++ W+tIa +++ gRt++++k++w++++ XP_024970417.1 56 RGEFSQEEENVILHLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNTHM 101 899*******************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence |
MKKGAWTSEE DQQLINYIQK HGHGSWRSLP KLAGLKRCGK SCRLRWTNYL RPDIKRGEFS 60 QEEENVILHL HSVLGNKWST IATRLPGRTD NEIKNYWNTH MKKKLLERGI DPMTHRPRTD 120 LFSCLPQLVA LANIKEILEH NQLAQNLQYF NLLLQSNTGL STLLNRTNSI PQIQEENPNL 180 MNGFPLEVGQ ESEEIAQLFV ENSSHVTQPL HDQEVSIMNL QTSNYDHEIV GNDYGQSRFA 240 SVNSSSSSSS VTWTPIPPLM DTITTNNSTG SLERSTTVSY GGSTGGDGVG SSYNWPEYLF 300 EDSFLDQNLR EMC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-82 | MYB family protein |