PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024970251.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family M-type_MADS
Protein Properties Length: 233aa    MW: 25801.8 Da    PI: 9.3011
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024970251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.62.8e-222674149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie+  nrqvtfskRr+g++KKA+EL++L++a++a+++ s+ g+++ +
  XP_024970251.1 26 KRIEEVNNRQVTFSKRRAGLFKKASELCILTGAQIAILVNSPGGRVFAF 74
                    79*******************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MIETNAVGGN NMKKKASQGR KKIEIKRIEE VNNRQVTFSK RRAGLFKKAS ELCILTGAQI  60
AILVNSPGGR VFAFGHPTAD ALIDRYLSTP AAATGSTSDG TSSSQKPLMV KEFNQHYVEV  120
SKELEAEKKR KEVIQESKMV NGGSGLAWYD ETIDELELEE LQQYLSSLVE LKRKVLVRAD  180
ELMMIKKAPA LLGPNMLDMG QVSNHIPNIE IMPSNMMAPV GFNFGPAMDY QPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-31M-type_MADS family protein