PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024970048.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 141aa MW: 16133.6 Da PI: 10.9178 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.8 | 2.9e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v v+ifsstgkl+e+ss XP_024970048.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVVIFSSTGKLHEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 68.1 | 2.9e-23 | 78 | 140 | 6 | 69 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + + +++ + +q+e++ Lk++++nLq+++Rh++Ge+L+ Ls+++Lq Le+qLe sl+ iR kK XP_024970048.1 78 LT-NPTSDIKFWQREATMLKQQLQNLQESHRHMMGEELSGLSVRDLQGLENQLEMSLQGIRVKK 140 33.577889****************************************************999 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADVGVVIFSS TGKLHEFSST 60 SMKSVIARYR RSKDEQQLTN PTSDIKFWQR EATMLKQQLQ NLQESHRHMM GEELSGLSVR 120 DLQGLENQLE MSLQGIRVKK V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-73 | MIKC_MADS family protein |