PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024970046.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 26881.7 Da PI: 10.1843

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024970046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.5	7.5e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v v+ifsstgkl+e+ss XP_024970046.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVVIFSSTGKLHEFSS 59 8***********************************************96 PP
2	K-box	90.1	4e-30	78	170	6	99
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + +++ + +q+e++ Lk++++nLq+++Rh++Ge+L+ Ls+++Lq Le+qLe sl+ iR kK++ll++++eel++k + ++++n++L+ k++ XP_024970046.1 78 LT-NPTSDIKFWQREATMLKQQLQNLQESHRHMMGEELSGLSVRDLQGLENQLEMSLQGIRVKKDQLLVNEVEELKQKGNFIHQQNMELHDKIN 170 33.567889**********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADVGVVIFSS TGKLHEFSST 60 SMKSVIARYR RSKDEQQLTN PTSDIKFWQR EATMLKQQLQ NLQESHRHMM GEELSGLSVR 120 DLQGLENQLE MSLQGIRVKK DQLLVNEVEE LKQKGNFIHQ QNMELHDKIN RVREENMGLY 180 KQVYPTRDVD AANKNVTSAL RITEDPHAPI QLQLSMPQQH NATEARMQST NLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	3e-97	MIKC_MADS family protein