PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024970045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26968.8 Da PI: 10.1843 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.5 | 7.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v v+ifsstgkl+e+ss XP_024970045.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVVIFSSTGKLHEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 90.1 | 4.1e-30 | 79 | 171 | 6 | 99 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + +++ + +q+e++ Lk++++nLq+++Rh++Ge+L+ Ls+++Lq Le+qLe sl+ iR kK++ll++++eel++k + ++++n++L+ k++ XP_024970045.1 79 LT-NPTSDIKFWQREATMLKQQLQNLQESHRHMMGEELSGLSVRDLQGLENQLEMSLQGIRVKKDQLLVNEVEELKQKGNFIHQQNMELHDKIN 171 33.567889**********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADVGVVIFSS TGKLHEFSST 60 SSMKSVIARY RRSKDEQQLT NPTSDIKFWQ REATMLKQQL QNLQESHRHM MGEELSGLSV 120 RDLQGLENQL EMSLQGIRVK KDQLLVNEVE ELKQKGNFIH QQNMELHDKI NRVREENMGL 180 YKQVYPTRDV DAANKNVTSA LRITEDPHAP IQLQLSMPQQ HNATEARMQS TNLSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-95 | MIKC_MADS family protein |