PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969955.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 627aa MW: 70127.3 Da PI: 7.3602

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969955.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_024969955.1 98 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLHPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP
2	START	169.3	2.6e-53	218	365	70	206
G.CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS START 70 e.qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152 e q+ e+++ ka+tl+vi++g ga+qlm+aelq+l+plv+ R+ +fvRy++ql+a++w+ivd+S+d+ +k+ + s++R++++pSg+ XP_024969955.1 218 EkQYEEMFPcmisKAATLDVICNGeganrnGAVQLMFAELQMLTPLVAtREMYFVRYSKQLNADKWAIVDISIDNVEKNI-DVSLARCRKRPSGC 311 3489999999999***************************************************************98.9********* PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++e+ksngh+kvtw+eh ++++++ h+++r +++sgla+ga++w+atlq+qce+ XP_024969955.1 312 IMEDKSNGHCKVTWIEHLECQKSISHSMYRAIINSGLAFGARHWMATLQQQCER 365 **************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MVMSSSNDNH NHNHPSTSLT KDLFPSTSLA LTLGFFREGE EQAVDDRRED GGNTTTTVTE 60 ISSENSGPAR SRSDDDFDVD PDVDDGDDDN NKNKSKKRKK YHRHTAEQIR EMEALFKESP 120 HPDEKQRQQL SKRLGLHPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEMDK LRDENKMLRE 180 TIKKGTCPNC GFGSSSKDAI TYTDEQQLRI ENAKLKAEKQ YEEMFPCMIS KAATLDVICN 240 GEGANRNGAV QLMFAELQML TPLVATREMY FVRYSKQLNA DKWAIVDISI DNVEKNIDVS 300 LARCRKRPSG CIMEDKSNGH CKVTWIEHLE CQKSISHSMY RAIINSGLAF GARHWMATLQ 360 QQCERLVFFL ATNVPTKDST GISTLAGRKS ILKLAQRMTW SFGRALGASS HCTWKKILSK 420 TGDDIRVASR KNLNDPGEPL GVILCAVSSI WLPVSHTVLF DFLRDETQRN EWDIMSNGGP 480 VQSIANLAKG KDRGNTVSIH TMKSKENMWM LEDSCTNSYE SMVVCAPVSV SSMQSVMAGC 540 DSSNISILPS GFSILPDGVE TRPLVITSKA QDKSWEGLGG SLLTVGFQIL TSNSPTGKHS 600 IESVESINTL ISTTLHNIKV GLQCDDQ

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MVMSSSNDNH NHNHPSTSLT KDLFPSTSLA LTLGFFREGE EQAVDDRRED GGNTTTTVTE  60
ISSENSGPAR SRSDDDFDVD PDVDDGDDDN NKNKSKKRKK YHRHTAEQIR EMEALFKESP  120
HPDEKQRQQL SKRLGLHPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEMDK LRDENKMLRE  180
TIKKGTCPNC GFGSSSKDAI TYTDEQQLRI ENAKLKAEKQ YEEMFPCMIS KAATLDVICN  240
GEGANRNGAV QLMFAELQML TPLVATREMY FVRYSKQLNA DKWAIVDISI DNVEKNIDVS  300
LARCRKRPSG CIMEDKSNGH CKVTWIEHLE CQKSISHSMY RAIINSGLAF GARHWMATLQ  360
QQCERLVFFL ATNVPTKDST GISTLAGRKS ILKLAQRMTW SFGRALGASS HCTWKKILSK  420
TGDDIRVASR KNLNDPGEPL GVILCAVSSI WLPVSHTVLF DFLRDETQRN EWDIMSNGGP  480
VQSIANLAKG KDRGNTVSIH TMKSKENMWM LEDSCTNSYE SMVVCAPVSV SSMQSVMAGC  540
DSSNISILPS GFSILPDGVE TRPLVITSKA QDKSWEGLGG SLLTVGFQIL TSNSPTGKHS  600
IESVESINTL ISTTLHNIKV GLQCDDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein