PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969954.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 721aa    MW: 80822.5 Da    PI: 6.5576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.2e-2166121156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_024969954.1  66 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLHPRQVKFWFQNRRTQIK 121
                     7999************************************************9877 PP
2START221.82.2e-692394595206
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                      a++el+k+a+a+ep+W  s     e++n+de+l +f+ + +      + +ea+r+sg+v+m+l++lv++++d+k q+ e+++    ka+tl+vi
  XP_024969954.1 239 LAMEELIKMASAGEPLWIHSFetgrEILNYDEYLHEFPIDTSsnvqhkRCIEASRDSGIVFMDLPQLVQSFMDVK-QYEEMFPcmisKAATLDVI 332
                     589****************999***************9988899999999*************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ++g      ga+qlm+aelq+l+plv+ R+ +fvRy++ql+a++w+ivd+S+d+ +k+  + s++R++++pSg+++e+ksngh+kvtw+eh +++
  XP_024969954.1 333 CNGeganrnGAVQLMFAELQMLTPLVAtREMYFVRYSKQLNADKWAIVDISIDNVEKNI-DVSLARCRKRPSGCIMEDKSNGHCKVTWIEHLECQ 426
                     *********************************************************98.9********************************** PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     +++ h+++r +++sgla+ga++w+atlq+qce+
  XP_024969954.1 427 KSISHSMYRAIINSGLAFGARHWMATLQQQCER 459
                     *******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    
MGFFREGEEQ AVDDRREDGG NTTTTVTEIS SENSGPARSR SDDDFDVDPD VDDGDDDNNK  60
NKSKKRKKYH RHTAEQIREM EALFKESPHP DEKQRQQLSK RLGLHPRQVK FWFQNRRTQI  120
KAIQERHENS LLKSEMDKLR DENKMLRETI KKGTCPNCGF GSSSKDAITY TDEQQLRIEN  180
AKLKAEIEKL RTSIGKYPQG MSPTNSCSAG NEQESRSSLD LCSGVFGLEK SRIMEIVNLA  240
MEELIKMASA GEPLWIHSFE TGREILNYDE YLHEFPIDTS SNVQHKRCIE ASRDSGIVFM  300
DLPQLVQSFM DVKQYEEMFP CMISKAATLD VICNGEGANR NGAVQLMFAE LQMLTPLVAT  360
REMYFVRYSK QLNADKWAIV DISIDNVEKN IDVSLARCRK RPSGCIMEDK SNGHCKVTWI  420
EHLECQKSIS HSMYRAIINS GLAFGARHWM ATLQQQCERL VFFLATNVPT KDSTGISTLA  480
GRKSILKLAQ RMTWSFGRAL GASSHCTWKK ILSKTGDDIR VASRKNLNDP GEPLGVILCA  540
VSSIWLPVSH TVLFDFLRDE TQRNEWDIMS NGGPVQSIAN LAKGKDRGNT VSIHTMKSKE  600
NMWMLEDSCT NSYESMVVCA PVSVSSMQSV MAGCDSSNIS ILPSGFSILP DGVETRPLVI  660
TSKAQDKSWE GLGGSLLTVG FQILTSNSPT GKHSIESVES INTLISTTLH NIKVGLQCDD  720
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein