PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969953.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 753aa MW: 84271.3 Da PI: 6.5897

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.4e-21	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_024969953.1 98 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLHPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP
2	START	221.6	2.4e-69	271	491	5	206
HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 a++el+k+a+a+ep+W s e++n+de+l +f+ + + + +ea+r+sg+v+m+l++lv++++d+k q+ e+++ ka+tl+vi XP_024969953.1 271 LAMEELIKMASAGEPLWIHSFetgrEILNYDEYLHEFPIDTSsnvqhkRCIEASRDSGIVFMDLPQLVQSFMDVK-QYEEMFPcmisKAATLDVI 364 589**************999***********9988899999999*********************.*************** PP CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 ++g ga+qlm+aelq+l+plv+ R+ +fvRy++ql+a++w+ivd+S+d+ +k+ + s++R++++pSg+++e+ksngh+kvtw+eh +++ XP_024969953.1 365 CNGeganrnGAVQLMFAELQMLTPLVAtREMYFVRYSKQLNADKWAIVDISIDNVEKNI-DVSLARCRKRPSGCIMEDKSNGHCKVTWIEHLECQ 458 *****************************************************98.9****************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqcek 206 +++ h+++r +++sgla+ga++w+atlq+qce+ XP_024969953.1 459 KSISHSMYRAIINSGLAFGARHWMATLQQQCER 491 *****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MVMSSSNDNH NHNHPSTSLT KDLFPSTSLA LTLGFFREGE EQAVDDRRED GGNTTTTVTE 60 ISSENSGPAR SRSDDDFDVD PDVDDGDDDN NKNKSKKRKK YHRHTAEQIR EMEALFKESP 120 HPDEKQRQQL SKRLGLHPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEMDK LRDENKMLRE 180 TIKKGTCPNC GFGSSSKDAI TYTDEQQLRI ENAKLKAEIE KLRTSIGKYP QGMSPTNSCS 240 AGNEQESRSS LDLCSGVFGL EKSRIMEIVN LAMEELIKMA SAGEPLWIHS FETGREILNY 300 DEYLHEFPID TSSNVQHKRC IEASRDSGIV FMDLPQLVQS FMDVKQYEEM FPCMISKAAT 360 LDVICNGEGA NRNGAVQLMF AELQMLTPLV ATREMYFVRY SKQLNADKWA IVDISIDNVE 420 KNIDVSLARC RKRPSGCIME DKSNGHCKVT WIEHLECQKS ISHSMYRAII NSGLAFGARH 480 WMATLQQQCE RLVFFLATNV PTKDSTGIST LAGRKSILKL AQRMTWSFGR ALGASSHCTW 540 KKILSKTGDD IRVASRKNLN DPGEPLGVIL CAVSSIWLPV SHTVLFDFLR DETQRNEWDI 600 MSNGGPVQSI ANLAKGKDRG NTVSIHTMKS KENMWMLEDS CTNSYESMVV CAPVSVSSMQ 660 SVMAGCDSSN ISILPSGFSI LPDGVETRPL VITSKAQDKS WEGLGGSLLT VGFQILTSNS 720 PTGKHSIESV ESINTLISTT LHNIKVGLQC DDQ

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MVMSSSNDNH NHNHPSTSLT KDLFPSTSLA LTLGFFREGE EQAVDDRRED GGNTTTTVTE  60
ISSENSGPAR SRSDDDFDVD PDVDDGDDDN NKNKSKKRKK YHRHTAEQIR EMEALFKESP  120
HPDEKQRQQL SKRLGLHPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEMDK LRDENKMLRE  180
TIKKGTCPNC GFGSSSKDAI TYTDEQQLRI ENAKLKAEIE KLRTSIGKYP QGMSPTNSCS  240
AGNEQESRSS LDLCSGVFGL EKSRIMEIVN LAMEELIKMA SAGEPLWIHS FETGREILNY  300
DEYLHEFPID TSSNVQHKRC IEASRDSGIV FMDLPQLVQS FMDVKQYEEM FPCMISKAAT  360
LDVICNGEGA NRNGAVQLMF AELQMLTPLV ATREMYFVRY SKQLNADKWA IVDISIDNVE  420
KNIDVSLARC RKRPSGCIME DKSNGHCKVT WIEHLECQKS ISHSMYRAII NSGLAFGARH  480
WMATLQQQCE RLVFFLATNV PTKDSTGIST LAGRKSILKL AQRMTWSFGR ALGASSHCTW  540
KKILSKTGDD IRVASRKNLN DPGEPLGVIL CAVSSIWLPV SHTVLFDFLR DETQRNEWDI  600
MSNGGPVQSI ANLAKGKDRG NTVSIHTMKS KENMWMLEDS CTNSYESMVV CAPVSVSSMQ  660
SVMAGCDSSN ISILPSGFSI LPDGVETRPL VITSKAQDKS WEGLGGSLLT VGFQILTSNS  720
PTGKHSIESV ESINTLISTT LHNIKVGLQC DDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein