PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024969944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26520.4 Da PI: 9.5161 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.9 | 1.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t+kl+ey+s XP_024969944.1 9 KKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 74.8 | 2.4e-25 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk+sg +l+++++e++q+e+++Lk+ ++nL+r++R++lG++Le ++eL Le++ ++++ iR++K +++ +++e+++kk +++q+ k+L XP_024969944.1 71 YQKASGIDLWNSHYEKMQEEMRQLKEVNKNLRRQIRQRLGDCLEHVGFEELLDLEKESQEAVYIIRERKLKVIGNKLETSKKKVRSAQDVYKKLM 165 899*******************************************************************************************9 PP K-box 96 kkle 99 ++++ XP_024969944.1 166 HQFD 169 9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KASELTVLCD AKVSIIMVSC TDKLHEYISP 60 SITTKQFFDQ YQKASGIDLW NSHYEKMQEE MRQLKEVNKN LRRQIRQRLG DCLEHVGFEE 120 LLDLEKESQE AVYIIRERKL KVIGNKLETS KKKVRSAQDV YKKLMHQFDI RGEDPQYGLI 180 EDGEYETVYG YPPPQMGGGA PRILTLRLQP NHPNNLHAAS DLTTYALLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 9e-90 | MIKC_MADS family protein |