PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969943.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 315aa MW: 34450.9 Da PI: 6.2249

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.9	1.8e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 +C+ +++ e++ fC ++ lC C H XP_024969943.1 4 NCDVCNKDEASVFCSADDAALCTACDHRVH 33 7****99***************9988 PP
2	zf-B_box	27.9	4.8e-09	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++ek++ lfC++++ lC+dC +++Hk Ht XP_024969943.1 55 SPLCDICQEKKALLFCQQDRAILCKDCDVAIHKVneHT 92 689*****************************656676 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MKINCDVCNK DEASVFCSAD DAALCTACDH RVHDANMLAG KHPRFSILLP SPKDSPLCDI 60 CQEKKALLFC QQDRAILCKD CDVAIHKVNE HTKNHCRFLL TGVKLSSAAL LPTAGNGVVP 120 DQNWESRDQE LVPIVNQTSS RTQKITTVTA QNMSPKSNGS DHGSATSSSI SEYLIEMLPG 180 WHVEDFLDSP CNFSKIGEDD PAVFWDDELL KGSMNDCFSP ETMGIWVPQA PPPAAPPPAA 240 PPEPRFHNSS QIQPYSNMGF GNQIISGSSL VFAPSNINNK ITKSTGKRRS DDGNCFTVPQ 300 ITPPPTNIKR SRTLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-73	DBB family protein