PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969875.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GRF

Protein Properties

Length: 583aa MW: 66321.9 Da PI: 7.8443

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969875.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.4	2.9e-24	92	134	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_024969875.1 92 LEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 134 69**************************************987 PP
2	Myb_DNA-binding	24.6	5.9e-08	472	498	21	48
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 + W++Ia +++ gRt++++k++w+ yl XP_024969875.1 472 IPWWSLIAGRLP-GRTDNEIKNYWNCYL 498 556*******.**********986 PP
3	QLQ	55.4	1.9e-19	7	41	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKy+++++PvP +L++ ++ XP_024969875.1 7 LFTAAQWEELEQQALIYKYMVSGVPVPTDLILSVR 41 5******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MMMMNNLFTA AQWEELEQQA LIYKYMVSGV PVPTDLILSV RRSLYNSSFS SSSSSSSSLL 60 SNQPTLGVWE GSFQYNQLYQ MGGSGYGRKI DLEPGRCRRT DGKKWRCSKE AYPDSKYCER 120 HMHRGRNRSR KPVEFSSSSS SSSTANVSSS PSTTISKSIS TSDHHAYPPF SSDHNNQTHY 180 SSSRPPIHTN FMDSSSYSHQ TPLKDYRYLQ GMKDLGEDER TAYFQLNDPY TTTQKMAAAA 240 AAAAAASSSS SDHHNYSHFN FQNLNDQFKE QKDKEEQSAQ GQHCFVMGTD FIKSSEETTN 300 TKPCIQTDTK VDQTTHTHTH HKQPFHHFFS PPKTTPNHDP GWVEVDQHQH QHQHQHHQHL 360 TNPPKSPLST QDLFQSKPRP YWCFLHLVVV VVDGVFYDVP VVSRCFLHLD GVFYDVSAIL 420 RCFLNLAVAV AVAVAEVEIT AANLVVVGNQ GKKQIREGQR HSIRKVKLRM GIPWWSLIAG 480 RLPGRTDNEI KNYWNCYLSK KKKKQSECYL IRDGSKLDQE RKALERVSKD MREEDVHTID 540 DGARVECSKV KFDVDDFFDF SDENPSTLDW VNKYLEGAGS GLL

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MMMMNNLFTA AQWEELEQQA LIYKYMVSGV PVPTDLILSV RRSLYNSSFS SSSSSSSSLL  60
SNQPTLGVWE GSFQYNQLYQ MGGSGYGRKI DLEPGRCRRT DGKKWRCSKE AYPDSKYCER  120
HMHRGRNRSR KPVEFSSSSS SSSTANVSSS PSTTISKSIS TSDHHAYPPF SSDHNNQTHY  180
SSSRPPIHTN FMDSSSYSHQ TPLKDYRYLQ GMKDLGEDER TAYFQLNDPY TTTQKMAAAA  240
AAAAAASSSS SDHHNYSHFN FQNLNDQFKE QKDKEEQSAQ GQHCFVMGTD FIKSSEETTN  300
TKPCIQTDTK VDQTTHTHTH HKQPFHHFFS PPKTTPNHDP GWVEVDQHQH QHQHQHHQHL  360
TNPPKSPLST QDLFQSKPRP YWCFLHLVVV VVDGVFYDVP VVSRCFLHLD GVFYDVSAIL  420
RCFLNLAVAV AVAVAEVEIT AANLVVVGNQ GKKQIREGQR HSIRKVKLRM GIPWWSLIAG  480
RLPGRTDNEI KNYWNCYLSK KKKKQSECYL IRDGSKLDQE RKALERVSKD MREEDVHTID  540
DGARVECSKV KFDVDDFFDF SDENPSTLDW VNKYLEGAGS GLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-39	GRF family protein