PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969874.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 510aa    MW: 57535.3 Da    PI: 7.1399
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS228.82.5e-701254982374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lL+ cA a+++g+ +++++lL  l+elasp+gd++ Rla++ ++AL  +l++  ++++   p+ + s  +++ +++ ++l  f+++ P++++ 
  XP_024969874.1 125 EQLLMPCAAAITAGNVTRVRHLLFVLRELASPTGDANYRLASHGLQALTLHLSS--TKVA--APAISFS--TVKPRFFQQSLinFNDINPWFTIP 213
                     689**************************************************9..2222..3333333..2344444444445*********** PP

            GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfe 177
                     + +aN+ Il+ ++++       +Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp +R+T+v +  ++      ++    +  +++ +fA+e +++++
  XP_024969874.1 214 NNIANNSILQVLAEHdrgsrANLHILDIGVSHGVQWPTLLEALSRRPgGPPPLVRLTVVPPTFEDhqipfaNSPPGYNFISNILRFANEYKINLH 308
                     ************99967766678************************55566*******9976667899997778888889999*********** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfd 269
                     +n l    l++l+++ ++ +p+E+l+V+ +++l +l    ++ +++r+e+Lkl+++l+P+ v+++++++d++ +   +F ++f++ +ey ++++d
  XP_024969874.1 309 INRLDNYPLQNLNPQIIKSSPDETLIVCAQFRLNNLN---HNNPDNRTEFLKLMRTLEPERVILSDNNMDCSCNicsNFETGFARRVEYLWSFLD 400
                     ***9888*****************************8...66666788********************9985444449***************** PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                     s+++ +    + r + Er++++ e+++++ +   +    +e++ekW er++ +GF +  ++e++++ a++llrk++ ++  r e+++g++ l Wk
  XP_024969874.1 401 STSVAF----KGREMEERKMMEGEASKALINTCGM----NEKKEKWGERMRGVGFVADVFREDVMEGARSLLRKYDgNWDLRAEDRNGCVELWWK 487
                     **9997....7777788888888888887777776....79999********************************9999*************** PP

            GRAS 364 drpLvsvSaWr 374
                     ++++ ++S W+
  XP_024969874.1 488 GQAVSFCSLWK 498
                     **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MTDPISDWLE DSISYLPSFL DDPYESTNII DDHWWAPAQD LQQHLLTTTL LTSNALNNST  60
CTNVPDPLIV SDHPKPVVSD LSKKRKAPED LVPRPAVQVK SKRGQGKSTK DGCSKVNNKN  120
GRWAEQLLMP CAAAITAGNV TRVRHLLFVL RELASPTGDA NYRLASHGLQ ALTLHLSSTK  180
VAAPAISFST VKPRFFQQSL INFNDINPWF TIPNNIANNS ILQVLAEHDR GSRANLHILD  240
IGVSHGVQWP TLLEALSRRP GGPPPLVRLT VVPPTFEDHQ IPFANSPPGY NFISNILRFA  300
NEYKINLHIN RLDNYPLQNL NPQIIKSSPD ETLIVCAQFR LNNLNHNNPD NRTEFLKLMR  360
TLEPERVILS DNNMDCSCNI CSNFETGFAR RVEYLWSFLD STSVAFKGRE MEERKMMEGE  420
ASKALINTCG MNEKKEKWGE RMRGVGFVAD VFREDVMEGA RSLLRKYDGN WDLRAEDRNG  480
CVELWWKGQA VSFCSLWKID AKTSDTTTNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-125GRAS family protein