PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969865.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 394aa MW: 43690.1 Da PI: 6.3621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.6e-08	284	324	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P + K++ a++L +A +Y+k L XP_024969865.1 284 ARQRRERISEKIRVLQKLVPGgN------KMDTASMLDEAANYLKFL 324 69****************955......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MDDLSWERNT SSFPWSHHHH HQEIEESFIF DSENIFLSPI QNLQDQTDSS IRAAGAGGHQ 60 MGSHQLAPAM ATAMLDSVNV SGGSQYWSQR LDVNGFQEGK NVIPTTTATV ISLESLDCLL 120 SATNSTGDTS ENHDNGISII FSDYKNLCNN IVVTNNNFSG DSSGDSVTKE TTGDDGIVSK 180 CSSEKTPTTK RTNNTTNGFH DDNVNPPKPK RPRSDPTRPT SSNINFRQAS SESEEPDSEA 240 IAQMKEMIYR AAAFRPVSFA DEEVVEKPRR KNVRISNDPQ TVAARQRRER ISEKIRVLQK 300 LVPGGNKMDT ASMLDEAANY LKFLRSQVKA LEQVGCGTTT NARSTTQIIE TNVNPNYVTV 360 GVPFNHNPFP MQTHFLLPHH HHHHQNLYCN TPPA

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MDDLSWERNT SSFPWSHHHH HQEIEESFIF DSENIFLSPI QNLQDQTDSS IRAAGAGGHQ  60
MGSHQLAPAM ATAMLDSVNV SGGSQYWSQR LDVNGFQEGK NVIPTTTATV ISLESLDCLL  120
SATNSTGDTS ENHDNGISII FSDYKNLCNN IVVTNNNFSG DSSGDSVTKE TTGDDGIVSK  180
CSSEKTPTTK RTNNTTNGFH DDNVNPPKPK RPRSDPTRPT SSNINFRQAS SESEEPDSEA  240
IAQMKEMIYR AAAFRPVSFA DEEVVEKPRR KNVRISNDPQ TVAARQRRER ISEKIRVLQK  300
LVPGGNKMDT ASMLDEAANY LKFLRSQVKA LEQVGCGTTT NARSTTQIIE TNVNPNYVTV  360
GVPFNHNPFP MQTHFLLPHH HHHHQNLYCN TPPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	272	EKPRRKN
2	267	272	KPRRKN
3	285	290	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	8e-54	bHLH family protein