PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969819.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24894.5 Da    PI: 10.2069
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvtfskRr g+lKKA ELS+LCdaeva+++fs++gk y +ss
  XP_024969819.1  9 KRIENPTNRQVTFSKRRDGLLKKAIELSILCDAEVALLVFSPSGKAYNFSS 59
                    79***********************************************96 PP
2K-box75.61.4e-2578171699
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      +s+  ++ e +++e++ +kk i++L+ +++hl GedL++L +keL+qLe+qL  ++ ++RskK +ll e+i+ l++  k lqeen  L+kk++
  XP_024969819.1  78 MNSQGVRTIEVWKNEMDEMKKTIDTLEAKHKHLAGEDLSTLGMKELKQLERQLRIGVDRVRSKKWRLLSEHISLLKRNHKTLQEENSILQKKIK 171
                     45566678899*********************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGRGKVELKR IENPTNRQVT FSKRRDGLLK KAIELSILCD AEVALLVFSP SGKAYNFSSH  60
DMDRTIRRYR NENGQHKMNS QGVRTIEVWK NEMDEMKKTI DTLEAKHKHL AGEDLSTLGM  120
KELKQLERQL RIGVDRVRSK KWRLLSEHIS LLKRNHKTLQ EENSILQKKI KIHELLGEAD  180
ENSGLESSDH ATQRLIPDGR PESPLYMNQL GFPGNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-46MIKC_MADS family protein