PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024969794.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Nin-like
Protein Properties Length: 346aa    MW: 39555.5 Da    PI: 4.6527
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024969794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.52e-26172219552
          RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  XP_024969794.1 172 LSRETISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 219
                     8899*****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MESRNSMRSW SVHEVNSAEE EDVFSFPHQM PPLDFGFPEV GCNGYDLLPI PLDQHQNGFE  60
DPVTCALGDD LVNVFGINNE LISNQNQETP MVNSCGFSDQ NQPLMITSTD EENSGKIMKN  120
KMMNDNEAMK VEEMLELEME VAVIRNPKES EKERVDHNGN GSGSSYTSKI MLSRETISQY  180
FYMPITQAAK ELNVGLTLLK KRCRELGIRR WPHRKLMSLQ TLINNVQQEL GKDTGEREEE  240
KLREAVMILE KERRMMEEIP DLQLEHNTKR LRQACFKANY KRRRTSTLIS ATAQRQSLSS  300
CPTTNCSINP AGYGLLDDDS GHYEEQEEMK SILFSDCFPS SSDNIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-52Nin-like family protein