PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024969786.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 369aa MW: 41379.4 Da PI: 9.128

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024969786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.9e-15	185	230	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRR+riN+++ L++l+P+a K +Ka++L ++++Y+k+Lq XP_024969786.1 185 HNQTERRRRERINQKMKALQKLVPNA-----NKTDKASMLDEVIDYLKKLQ 230 9**********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MMFSRLSDYG VAEITWENGQ PAMHGLGRAN ETLESIVHQA TTCYNQSQNQ EIDLQQSQSL 60 PRSRNLSSNV ASSSGKWGDS AGQSYLKKRP RSSAIFHDEC VRNLGTATLQ EDNISNGATI 120 NSKHNDTTMM TWPSFDSPNQ SLKSKNTDDD SACQYGSENQ EEECRNEGET VRSQSSRRSR 180 AAAIHNQTER RRRERINQKM KALQKLVPNA NKTDKASMLD EVIDYLKKLQ AQVQLMKNMP 240 ISPPQMMIQL QQQQQQQQQQ QLQMSMLTRM GMGFGLQMGM PGVMPPPAHH PFMVPQTMIS 300 PTHVGTTSQT IPTRPSTNAT VPFSDPHSTI LAQHMNLDMY NMAAFYRQQV NQGKSIGTSS 360 SKSNHIRGE

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MMFSRLSDYG VAEITWENGQ PAMHGLGRAN ETLESIVHQA TTCYNQSQNQ EIDLQQSQSL  60
PRSRNLSSNV ASSSGKWGDS AGQSYLKKRP RSSAIFHDEC VRNLGTATLQ EDNISNGATI  120
NSKHNDTTMM TWPSFDSPNQ SLKSKNTDDD SACQYGSENQ EEECRNEGET VRSQSSRRSR  180
AAAIHNQTER RRRERINQKM KALQKLVPNA NKTDKASMLD EVIDYLKKLQ AQVQLMKNMP  240
ISPPQMMIQL QQQQQQQQQQ QLQMSMLTRM GMGFGLQMGM PGVMPPPAHH PFMVPQTMIS  300
PTHVGTTSQT IPTRPSTNAT VPFSDPHSTI LAQHMNLDMY NMAAFYRQQV NQGKSIGTSS  360
SKSNHIRGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	LKKRPRS
2	189	194	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61270.1	5e-24	bHLH family protein